Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j18
         (509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor...    27   5.5  
At3g47780.1 68416.m05205 ABC transporter family protein transpor...    27   5.5  
At2g41790.1 68415.m05165 peptidase M16 family protein / insulina...    27   7.3  
At1g16260.1 68414.m01947 protein kinase family protein contains ...    27   7.3  
At2g20290.1 68415.m02370 myosin, putative similar to myosin (GI:...    27   9.7  

>At5g42390.1 68418.m05161 metalloendopeptidase identical to
            chloroplast processing enzyme metalloendopeptidase
            [Arabidopsis thaliana] gi|2827039|gb|AAC39482
          Length = 1265

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 57   SRLPISKMSLHMSAQELLKLGDEGRQKPFLNKYWPEIIGVTFGI 188
            S+LP++   L  S ++LL+ GD   QK    +  P   GVT G+
Sbjct: 1035 SKLPVAHDGLLKSEEQLLEGGDRELQKKL--RAHPLFFGVTMGL 1076


>At3g47780.1 68416.m05205 ABC transporter family protein transport
           protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 935

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 480 YFTFFNISQQLNI*FTFNELGSKVQTSHQSSYVREQGNH-LGVILYNACI 334
           YF + N+  Q+ + F  + + SKV+TS  +SY+   G+  LG+ L N  I
Sbjct: 427 YFLYLNL--QIALAFLVSSVFSKVKTSTVASYIYVFGSGLLGLFLLNFLI 474


>At2g41790.1 68415.m05165 peptidase M16 family protein / insulinase
           family protein contains Pfam domain, PF05193: Peptidase
           M16 inactive domain; similar to insulin-degrading enzyme
           (Insulysin, Insulinase, Insulin protease) [Mouse]
           SWISS-PROT:Q9JHR7
          Length = 970

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 282 LSYVQHKRNEYLAEKDAVYRHYIELHPDDF 371
           + Y  H+     +++++   HYI++H DDF
Sbjct: 737 MKYFYHQDGSNPSDENSALVHYIQVHRDDF 766


>At1g16260.1 68414.m01947 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 361 QMISLFPNVRRLVTCLNLGSQF 426
           Q I L P +RR VT  NLG  F
Sbjct: 69  QPILLLPRIRRAVTSFNLGDPF 90


>At2g20290.1 68415.m02370 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1493

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 260  NWRLGQHFKLCTA*TE*IFSRKGCSIQALYRIT 358
            N ++ QHFKLCT   + I++ K  S   +  +T
Sbjct: 1407 NLQIQQHFKLCTLYKDEIYNTKSVSQDVIASMT 1439


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,539,036
Number of Sequences: 28952
Number of extensions: 212972
Number of successful extensions: 524
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)