Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j17
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 32 0.073
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 28 1.2
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.2
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 27 2.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.7
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 2.7
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 4.8
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 6.3
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.3
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 6.3
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po... 25 8.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.4
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 8.4
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 31.9 bits (69), Expect = 0.073
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = +3
Query: 141 SSLYIPTVATGNGQATVTSLPNCFSPATGFPDYGPVRTNQVTPLVTEIVPSLQFGDISVT 320
S+ + TG G AT TS P +S ++ P P + T + +L + S+T
Sbjct: 326 SNTSVTYTGTGTGSATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASNTSIT 385
Query: 321 GDMPIGGTIKVSGCFPVYGTVAV-DGNMPSSGKAVINTGGGFVT 449
G+ + P Y +V ++PSS + ++ + T
Sbjct: 386 YTGTGTGSATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTT 429
Score = 25.4 bits (53), Expect = 6.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 96 SGNGCLGSNLYSPY--GSSLYIPTVATGNGQATVTSLPNCFSPATGFPDYGPV--RTNQV 263
+G G + SPY SS+ +PT + +G +V+S + SP + F + +N+
Sbjct: 497 TGTGSATATSSSPYYSNSSIIVPTTVSTSG--SVSSFSSSPSPTSSFSGTSALSSSSNEE 554
Query: 264 TPLVTEI 284
T T++
Sbjct: 555 TTTTTQV 561
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 235 TTAPSALTK*RPWSPRSCLLC 297
+++P AL K R SP+SCL+C
Sbjct: 2 SSSPPALKKFRKRSPKSCLIC 22
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +3
Query: 72 QGILSLPMSGNGCLGSNLYSPYGSSLYIPTVATGNGQATVTSLPNCFSPATGFPDYGPVR 251
Q I + P + NG L N Y+P+ + L+ P+ + +G S PN S + G
Sbjct: 355 QQISNGPTAVNG-LPMNSYTPHSNHLHSPSPNSNSGPTDSLSAPNSTSSPSMAHANGASF 413
Query: 252 TNQVTPLVTEIVPS 293
+Q L I P+
Sbjct: 414 ASQYPSLNKSIFPA 427
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 26.6 bits (56), Expect = 2.7
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 165 ATGNGQATVTSLPNCFSPATGFPDYGPV--RTNQVTPLVTEIVPSLQFGDISVT 320
A N AT T+LP P G PDY V + N P ++ QF DIS T
Sbjct: 641 ALKNAIAT-TNLPAVADPVRGSPDYPFVIEQYNLERPEYSKTASRPQFSDISST 693
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +3
Query: 78 ILSLPMSGNGCLGSNLYSPYGSSLYIPTVATGNGQATVTSLPNCFSPATGFP 233
+ S P++ C S PY S+ T T T TS+P +P T P
Sbjct: 440 VTSTPLATTNCTTSTSV-PYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 382 TVP*TGKQPLTFIVPPIGMSPVTEMSPNCREGTISVTRGVTWL 254
T P LT PP+ + PVT SPN ++ R V W+
Sbjct: 231 TTPPVNNTLLTPPAPPVELPPVTTTSPN------AIIRSVQWI 267
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 334 IGMSPVTEMSPNCREGTI 281
IG SP+TE+SP+ R T+
Sbjct: 845 IGASPITELSPSIRIDTL 862
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 391 STATVP*TGKQPLTFIVP-PIGMSPVT 314
ST T+P GK+P+ + P PI +P++
Sbjct: 494 STKTLPSIGKKPIPLLDPNPISSTPIS 520
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 120 NLYSPYGSSLYIPTVATGNGQATVTSLPNC 209
+LY+ +GS++ PT A G Q LPNC
Sbjct: 590 HLYNFFGSAIITPTTAHGVPQ---PQLPNC 616
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 279 EIVPSLQFGDISVTGDM--PIGGTIKVSGCFPVYGTVAVDGNMPSS 410
+ PS+ GD+S+T P T+ +G Y A DGN PSS
Sbjct: 146 DFFPSIN-GDLSLTVAQRHPFVDTVTKAGILLNYWENAYDGNKPSS 190
>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 340 PPIGMSPVTEMSPN 299
PP+G P+ E SPN
Sbjct: 102 PPVGWEPIVEESPN 115
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 8.4
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +3
Query: 90 PMSGNGCLGSNLYSPYGSSLYIPTVATGNGQA---TVTSLPNCFSPATGFPDYGPVRTNQ 260
P++G + +YSPY S I + +G A T S N ++P D V + Q
Sbjct: 1622 PLTGQESMNMGVYSPYRRSTEIAENMSMDGNAYPYTPASQENPYTPRHSQEDNASVLSQQ 1681
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.0 bits (52), Expect = 8.4
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 135 YGSSLYIPTVATGNGQATVTSLPNCFSPA-TGFPDYGPVRTNQVTPLVTEIVPSLQFGDI 311
Y +++ +P + G G +LPN +P+ + GPV + +V +LQ
Sbjct: 701 YNTNVSLPPRSPGTGSLAAGNLPNEKAPSLMTMVNGGPV-PGDIGEASIPVVQNLQPSTA 759
Query: 312 SVTGDMPIGGTIKV 353
V + +G IK+
Sbjct: 760 HVDPESDLGRVIKI 773
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,218
Number of Sequences: 5004
Number of extensions: 56852
Number of successful extensions: 133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -