Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j17
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353...    30   1.2  
12_02_0270 - 16626301-16626630                                         28   4.9  
01_07_0082 - 40965947-40967023                                         28   6.5  
07_03_1257 - 25241194-25242018                                         27   8.6  
05_03_0258 - 11153709-11156090                                         27   8.6  
01_01_0529 + 3874865-3876285,3876352-3876367                           27   8.6  

>03_05_1071 +
           30133696-30133874,30134294-30135200,30135224-30135358,
           30135545-30136553,30136699-30136703
          Length = 744

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 15/130 (11%)
 Frame = +3

Query: 96  SGNGCLGSNLYSPYGSSLYIPTVATGNGQATVTSLPNCFSPATGFPDYG-PVRTNQVTPL 272
           SG    GS++   +  +L      T +G   V      F P  GFP  G PV    V  +
Sbjct: 195 SGGNFAGSHV--GFNPNLGFQPFGTASGHGAVAG-QEIFKPLAGFPPVGAPVAAGPVAQV 251

Query: 273 ----VTEIVPSLQ---------FGDISVTGDMPI-GGTIKVSGCFPVYGTVAVDGNMPSS 410
               VT+  P++Q          G  +V G  P+ GG +     FPV G         S+
Sbjct: 252 GHGPVTD-GPTIQGGASTAFPPAGGAAVVGAFPVAGGGVATDAAFPVLGGAGPPAAGTSA 310

Query: 411 GKAVINTGGG 440
           G  ++ +GGG
Sbjct: 311 G-PLLPSGGG 319


>12_02_0270 - 16626301-16626630
          Length = 109

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 175 TARPRSPPYR--IALAPQRGFRTTAPSALTK*RPWSPRSCLLCSSV 306
           TA P   P R  + LA  R   T   SALT  RP S ++  +CSS+
Sbjct: 27  TANPAGSPPRAHVDLAVGRVLATARASALTSSRPSSTKTKPVCSSL 72


>01_07_0082 - 40965947-40967023
          Length = 358

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
 Frame = -3

Query: 439 PPPVFMTALPEDGML----PSTATVP*TGK--QPLTFIVPPIGMSPVTEMSPNCREG 287
           PP  + TA   DG      P  +  P  GK  +P T   PP G  P T  S   + G
Sbjct: 178 PPTAYPTAAKADGSAAAAYPPQSAYPPPGKGNEPSTAYPPPAGYPPATGSSKPAKAG 234


>07_03_1257 - 25241194-25242018
          Length = 274

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +1

Query: 103 TAASGRTCTALTAHPSTFPQ*RPGTARPRSPPYRIALAPQRGFRTTAPSALTK*RPWSPR 282
           TAA+   C A +  PS+ P  +P   RPRSP         R  +  AP    +    SP 
Sbjct: 10  TAAAAAECPATSPSPSSPPPLQP---RPRSPRPMPQAVRHRSLQPPAPDVAGRDSTPSPA 66

Query: 283 S 285
           S
Sbjct: 67  S 67


>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -3

Query: 478 PHPHEGSMY*VTKPPPVFMTALPEDGMLPSTATVP*TGKQPLTFIVPPIGMSPVTEMSP 302
           P PH   +   T PPP   ++LP D +L      P   + P T    P    P + +SP
Sbjct: 23  PPPHT-VLLPATPPPPPSRSSLPLDSLLLHLTAAPPPPQPPATRRPHPTPTPPHSFLSP 80


>01_01_0529 + 3874865-3876285,3876352-3876367
          Length = 478

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
 Frame = -2

Query: 368 REATAHFYRAAYRHVPCDRNVTELQRRHDLGDQGRHLVSADGAVVRKP------RCGAKA 207
           R+ ++   RA +R  P     TE+   H    +    +S DGA    P      R GA+ 
Sbjct: 23  RKGSSDGSRAVHRRKPTPTKETEIPGGHGRPKRSSSALSLDGAGDSNPTWVILNRVGARR 82

Query: 206 IR*GGDRGLAVPGRYCGNVE 147
               GDR  +V  R  G  E
Sbjct: 83  DSFRGDRTTSVASRTSGGKE 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,691,478
Number of Sequences: 37544
Number of extensions: 468817
Number of successful extensions: 1310
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)