Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j17
         (597 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF364549-1|AAK52057.1|  454|Drosophila melanogaster gag protein ...    29   6.3  
AE014296-2536|AAF49616.1| 2139|Drosophila melanogaster CG6498-PA...    29   6.3  

>AF364549-1|AAK52057.1|  454|Drosophila melanogaster gag protein
           protein.
          Length = 454

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 240 GPVRTNQVTPLVTEIVPSLQFGDISVTGDMPIGGTIKVSGCFP 368
           G V   Q+ P   E  P   +  + +TG +P G T+    C P
Sbjct: 81  GQVAAIQIAPARAEAPPIKVYRPVEITGLVPCGETLDAVKCLP 123


>AE014296-2536|AAF49616.1| 2139|Drosophila melanogaster CG6498-PA
            protein.
          Length = 2139

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/77 (27%), Positives = 29/77 (37%)
 Frame = -3

Query: 439  PPPVFMTALPEDGMLPSTATVP*TGKQPLTFIVPPIGMSPVTEMSPNCREGTISVTRGVT 260
            PPP  +  LP  G +  +      G  P    V P G+ P     P+   G        T
Sbjct: 1729 PPPTQLVLLPHVGAVVGSNPTS-VGNVP----VSPTGVVPQLYQRPSTLHGLKHKLHAAT 1783

Query: 259  WLVRTGP*SGNPVAGLK 209
             ++  G  + NP  GLK
Sbjct: 1784 AVIAGGGNANNPAGGLK 1800


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,362,307
Number of Sequences: 53049
Number of extensions: 754731
Number of successful extensions: 2234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2233
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)