Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j17
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.75 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.75 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.2  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   9.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   9.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.2  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 475 HPHEGSMY*VTKPPPVFMTALPEDGML 395
           H H G++Y   + P    T  PEDG L
Sbjct: 105 HDHLGTLYPGMRAPSFRCTERPEDGAL 131


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 475 HPHEGSMY*VTKPPPVFMTALPEDGML 395
           H H G++Y   + P    T  PEDG L
Sbjct: 105 HDHLGTLYPGMRAPSFRCTERPEDGAL 131


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 470 WMWTSIGTLRRSIDINHNIFAHN*T 544
           W+WT  G +RR++    ++  H+ T
Sbjct: 176 WIWTPHGWMRRNVLNKQHVHFHDYT 200


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 15  GTSTEMESGGVLAVILVLIQGILSLPMSGNGCLGS 119
           G S ++E+G     I +++ G +   +S  GC G+
Sbjct: 39  GVSKQIETGLAFPSITLIVLGSIIFVISFFGCCGA 73


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 263 DAPGHRD 283
           DAPGHRD
Sbjct: 91  DAPGHRD 97


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 263 DAPGHRD 283
           DAPGHRD
Sbjct: 18  DAPGHRD 24


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 263 DAPGHRD 283
           DAPGHRD
Sbjct: 34  DAPGHRD 40


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 263 DAPGHRD 283
           DAPGHRD
Sbjct: 91  DAPGHRD 97


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 322 PVTEMSPNCREGTISVTRGVTWLVRTGP*SGNPVAGLKQFGK 197
           P+  +SP  +   I   R     V+    SGNPVA +   G+
Sbjct: 557 PMAVVSPRLKVHGIRGLRVADASVQPQVISGNPVASVNMVGE 598


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,119
Number of Sequences: 438
Number of extensions: 4520
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)