Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j15
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...   106   3e-24
SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   4.1  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    26   5.4  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   5.4  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    25   7.2  

>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score =  106 bits (254), Expect = 3e-24
 Identities = 56/149 (37%), Positives = 89/149 (59%), Gaps = 9/149 (6%)
 Frame = +3

Query: 186 GGWIKSIR-------TKDYVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPA 344
           GGW++S++       T   +FEQGPRT+RP GV GL  L++I  LG+ + +  I  + P+
Sbjct: 38  GGWLQSVKIPCADSPTGTVLFEQGPRTLRPAGVAGLANLDLISKLGIEDKLLRISSNSPS 97

Query: 345 ARNRMIYVNNNLYLLPSSLKGVFQK-NEPFSKPLIYA-LYHDLKKPHKQLKDDSIYNFVE 518
           A+NR IY  + L  +PSS+ G  +   +P  +P+  A +    +K  +   D+S+ +F+ 
Sbjct: 98  AKNRYIYYPDRLNEIPSSILGSIKSIMQPALRPMPLAMMLEPFRKSKRDSTDESVGSFMR 157

Query: 519 RRFGKEIADYAISPMICGICAGDAKEISV 605
           RRFGK + D  +S MI GI AGD  ++S+
Sbjct: 158 RRFGKNVTDRVMSAMINGIYAGDLNDLSM 186


>SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 118

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 337 WSGFIGDICSLRPKSCIIFSVLSPVTPLGRIVL 239
           +SG I  +C L PK   +  +L P+TP+G +V+
Sbjct: 78  FSGTIYGLCLL-PKGHSLRRILGPLTPIGGLVM 109


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 429 FSKPLIYALYHDLKKPHKQLKDDSIYNFVERR 524
           + +PL+   YH L K HK   DDS+ + + +R
Sbjct: 52  YVRPLLNLKYHHLIKLHKG-SDDSVQSSIRKR 82


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 335 VRFYR*YMLAKAQILYHIQCIKPGNSFGPYSSWALLKNVILCP 207
           ++FY   ++A    LYH+QC+ P  SF  ++S    K ++  P
Sbjct: 180 IQFYT-TLIAIIGELYHLQCLSPLTSF--FTSCVTPKTILESP 219


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 363 YVNNNLYLLPSSLKGVFQKNEPFSKPLIYALYHDLKKPHKQL 488
           +V NN   L S   G+ +   PF + + + + ++L  PH+ +
Sbjct: 399 HVKNNPNTLISQFYGLHRVKLPFGRKIHFVVMNNLFPPHRDI 440


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 363 YVNNNLYLLPSSLKGVFQKNEPFSK 437
           Y+NNN YL PS +      N P+ K
Sbjct: 469 YINNNSYLPPSYMDFYTWYNSPYPK 493


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +3

Query: 192 WIKSIRTKDYVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPA 344
           W+ + R + Y    GP  +    +  +N +  I D+G +  +S ++ D PA
Sbjct: 329 WVHTFRLRIY----GPAVLPMLALYIVNMMEAIGDIGATSDVSMLEVDGPA 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,391
Number of Sequences: 5004
Number of extensions: 52402
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)