BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11j15 (651 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_0330 + 24456200-24456261,24456385-24456520,24457100-244571... 40 0.002 03_01_0407 + 3148282-3148587,3148715-3148850,3149230-3149366,314... 29 2.4 10_05_0034 + 8431753-8431790,8431940-8432063,8432726-8433038,843... 29 4.2 >04_04_0330 + 24456200-24456261,24456385-24456520,24457100-24457165, 24457260-24457310,24457399-24457455,24457742-24457827, 24458207-24458216,24458385-24458450,24458744-24458784, 24460050-24460182,24460857-24461045,24461145-24461219, 24462228-24462358,24463155-24463229,24463385-24463562 Length = 451 Score = 39.5 bits (88), Expect = 0.002 Identities = 36/170 (21%), Positives = 75/170 (44%), Gaps = 9/170 (5%) Frame = +3 Query: 168 EATNYCGGWIKSIRTKDYVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPAA 347 EA + GG I++ +++++G T+ + L +I DLGL K +P + Sbjct: 40 EAADRAGGKIRTNSEGGFIWDEGANTMTE---SELEASRLIDDLGLQG-----KQQYPNS 91 Query: 348 RNRMIYVNNN---------LYLLPSSLKGVFQKNEPFSKPLIYALYHDLKKPHKQLKDDS 500 +++ V + + L+ S++ K + F +P +Y ++ ++ D+ Sbjct: 92 QHKRYIVKDGAPTLIPSDPIALMKSTVLSTKSKLKLFLEPFLYE--KSSRRTSGKVSDEH 149 Query: 501 IYNFVERRFGKEIADYAISPMICGICAGDAKEISVKFLMKTLFEWEQTHG 650 + ER ++ DY I P + G GD + +S++ L+ E +G Sbjct: 150 LS---ER--DNQVVDYLIDPFVAGTSGGDPESLSIRHAFPALWNLENKYG 194 >03_01_0407 + 3148282-3148587,3148715-3148850,3149230-3149366, 3149664-3149787,3150045-3150394 Length = 350 Score = 29.5 bits (63), Expect = 2.4 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = +3 Query: 384 LLPSSLKGVFQ-KNEPFSKPLIYALYHDLKKPHKQLKDDSIYNFVERRFGKEIADYAISP 560 +LPS+ K V + + E PLI + +LK+ K + DS+ FG+ Y S Sbjct: 14 MLPSNAKEVEELRRESARNPLIAFTFEELKRITKNFRQDSLLG--GGGFGRVYKGYITSD 71 Query: 561 MICGICAGDAKEISVK 608 + G+ + ++VK Sbjct: 72 LREGLTIEEPLRVAVK 87 >10_05_0034 + 8431753-8431790,8431940-8432063,8432726-8433038, 8433189-8433251,8433778-8434058 Length = 272 Score = 28.7 bits (61), Expect = 4.2 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -3 Query: 352 FLAAGWSGFIGDICSLRPKSCIIFSVLSPVT 260 +++ GW F+ ++ LR C+ FSV SP T Sbjct: 94 YISKGWKKFV-ELTDLRVGQCVRFSVSSPST 123 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,875,517 Number of Sequences: 37544 Number of extensions: 301079 Number of successful extensions: 659 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 645 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 659 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1620349964 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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