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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j15
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0330 + 24456200-24456261,24456385-24456520,24457100-244571...    40   0.002
03_01_0407 + 3148282-3148587,3148715-3148850,3149230-3149366,314...    29   2.4  
10_05_0034 + 8431753-8431790,8431940-8432063,8432726-8433038,843...    29   4.2  

>04_04_0330 +
           24456200-24456261,24456385-24456520,24457100-24457165,
           24457260-24457310,24457399-24457455,24457742-24457827,
           24458207-24458216,24458385-24458450,24458744-24458784,
           24460050-24460182,24460857-24461045,24461145-24461219,
           24462228-24462358,24463155-24463229,24463385-24463562
          Length = 451

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 36/170 (21%), Positives = 75/170 (44%), Gaps = 9/170 (5%)
 Frame = +3

Query: 168 EATNYCGGWIKSIRTKDYVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHISPIKPDHPAA 347
           EA +  GG I++     +++++G  T+     + L    +I DLGL       K  +P +
Sbjct: 40  EAADRAGGKIRTNSEGGFIWDEGANTMTE---SELEASRLIDDLGLQG-----KQQYPNS 91

Query: 348 RNRMIYVNNN---------LYLLPSSLKGVFQKNEPFSKPLIYALYHDLKKPHKQLKDDS 500
           +++   V +          + L+ S++     K + F +P +Y      ++   ++ D+ 
Sbjct: 92  QHKRYIVKDGAPTLIPSDPIALMKSTVLSTKSKLKLFLEPFLYE--KSSRRTSGKVSDEH 149

Query: 501 IYNFVERRFGKEIADYAISPMICGICAGDAKEISVKFLMKTLFEWEQTHG 650
           +    ER    ++ DY I P + G   GD + +S++     L+  E  +G
Sbjct: 150 LS---ER--DNQVVDYLIDPFVAGTSGGDPESLSIRHAFPALWNLENKYG 194


>03_01_0407 +
           3148282-3148587,3148715-3148850,3149230-3149366,
           3149664-3149787,3150045-3150394
          Length = 350

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 384 LLPSSLKGVFQ-KNEPFSKPLIYALYHDLKKPHKQLKDDSIYNFVERRFGKEIADYAISP 560
           +LPS+ K V + + E    PLI   + +LK+  K  + DS+       FG+    Y  S 
Sbjct: 14  MLPSNAKEVEELRRESARNPLIAFTFEELKRITKNFRQDSLLG--GGGFGRVYKGYITSD 71

Query: 561 MICGICAGDAKEISVK 608
           +  G+   +   ++VK
Sbjct: 72  LREGLTIEEPLRVAVK 87


>10_05_0034 +
           8431753-8431790,8431940-8432063,8432726-8433038,
           8433189-8433251,8433778-8434058
          Length = 272

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 352 FLAAGWSGFIGDICSLRPKSCIIFSVLSPVT 260
           +++ GW  F+ ++  LR   C+ FSV SP T
Sbjct: 94  YISKGWKKFV-ELTDLRVGQCVRFSVSSPST 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,875,517
Number of Sequences: 37544
Number of extensions: 301079
Number of successful extensions: 659
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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