Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j15
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59043| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 31   0.62 
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)                     28   5.7  
SB_1137| Best HMM Match : CC (HMM E-Value=2)                           28   5.7  
SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12)                    28   7.6  
SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34)                   28   7.6  

>SB_59043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +3

Query: 537 IADYAISPMICGICAGDAKEISVKFLMKTLFEWEQTHG 650
           +A+Y   P+  GI AGDA+ +S++ +   ++E E+ +G
Sbjct: 1   VAEYIGDPVCRGIFAGDARALSLRAVFPAVYEMEKNYG 38


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -2

Query: 383  IQIIVYVYHSVPSGRVVRFYR*YML 309
            +Q++VY++ S+P+G +  FYR Y L
Sbjct: 1101 LQVVVYIFESLPTGGMSGFYRLYSL 1125


>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
          Length = 534

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 201 SIRTKDYVFEQGPRTIRPKGV-TGLNTLNMIQDLGLSEHISPIKPDHPAAR 350
           SI TK  +F    + I   G  T  NT+  I++ GL +H+    P+ P AR
Sbjct: 228 SITTKIRLFNTTVKPILLYGAETWRNTVTTIRNPGLHQHLPEEDPEDPLAR 278


>SB_1137| Best HMM Match : CC (HMM E-Value=2)
          Length = 410

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = -1

Query: 582 QHRCHKSLVKLHNQQFPSRISFQR-SYK--SNHLSTVCEASLNRDKVRKSAASKRAHSFG 412
           +H   K + K HN +F S  + Q  SYK  +NHL+ + E  + R       A+K  H+  
Sbjct: 330 EHDQRKHIYK-HNFRFISSKNRQNLSYKLKTNHLADLTEKEVQRTNGLLDDATKCTHAQS 388

Query: 411 IHLLNLKAIN 382
           +H    KA++
Sbjct: 389 LHFDLAKALH 398


>SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12)
          Length = 567

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 319 DICSLRPKSCIIFSVLSPVTPLGRIVLGP 233
           +I  L PKSC     L P TP G  V+ P
Sbjct: 450 EISVLYPKSCHHIKQLRPATPSGHYVIDP 478


>SB_26945| Best HMM Match : PET (HMM E-Value=7.4e-34)
          Length = 621

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
 Frame = +3

Query: 252 PKGVTGLNTLNMIQDLGLSEHISPIKPDHPAARNRMIYVN-NNLYLLPSSLKGVFQKNEP 428
           P G   L   N IQ+ G    +  +   +P +    +Y N     L P  LK    KN  
Sbjct: 73  PTGKRDLGHRNFIQEWGKKTGLQDLSNPNPPSERYFVYTNIRKAPLAPYDLKRKICKNCK 132

Query: 429 FSKPLIYALYHDLKKPHK 482
             K   + LY D+   H+
Sbjct: 133 -CKQEDHDLYEDIANEHE 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,570,582
Number of Sequences: 59808
Number of extensions: 358902
Number of successful extensions: 840
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)