Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j15
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +3

Query: 411 FQKNEPFSKPLIYA-LYHD--LKKPHKQLKDDSIYNFVERRF 527
           F KN     P  YA L     ++ P KQL  + IYN+ +  F
Sbjct: 497 FYKNADVRPPFTYASLIRQSIIESPDKQLTLNEIYNWFQNTF 538


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 586 SPAQMPQIIGEIA*SAISFPNLLSTKL 506
           +P ++P  IGE++ +   FP L  T+L
Sbjct: 65  APQKIPAWIGELSATKFGFPCLQYTQL 91


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 586 SPAQMPQIIGEIA*SAISFPNLLSTKL 506
           +P ++P  IGE++ +   FP L  T+L
Sbjct: 65  APQKIPAWIGELSATKFGFPCLQYTQL 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,609
Number of Sequences: 438
Number of extensions: 3170
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)