Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j15
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative si...    52   4e-07
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane prote...    29   3.5  
At1g68890.1 68414.m07884 menaquinone biosynthesis protein-relate...    29   3.5  

>At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative
           similar to protoporphyrinogen IX oxidase, mitochondrial
           (PPO II) from Nicotiana tabacum [SP|O24164], Glycine
           max, AB025102, Spinacia oleracea [GI:14349153]; contains
           Pfam amine oxidase, flavin-containing domain [PF015930]
          Length = 508

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 4/165 (2%)
 Frame = +3

Query: 168 EATNYCGGWIKSIRTKDYVFEQGPRTIRPKGVTGLNTLNMIQDLGLSEHIS-PI-KPDHP 341
           EA    GG ++S+     ++++G  T+           +++ DLGL E    PI +    
Sbjct: 46  EADGRVGGKLRSVMQNGLIWDEGANTMTEAEP---EVGSLLDDLGLREKQQFPISQKKRY 102

Query: 342 AARNRM--IYVNNNLYLLPSSLKGVFQKNEPFSKPLIYALYHDLKKPHKQLKDDSIYNFV 515
             RN +  +   N + L+ SS+     K +   +P ++       K      ++S+  F 
Sbjct: 103 IVRNGVPVMLPTNPIELVTSSVLSTQSKFQILLEPFLWK--KKSSKVSDASAEESVSEFF 160

Query: 516 ERRFGKEIADYAISPMICGICAGDAKEISVKFLMKTLFEWEQTHG 650
           +R FG+E+ DY I P + G  A D   +S+K     L+  E++ G
Sbjct: 161 QRHFGQEVVDYLIDPFVGGTSAADPDSLSMKHSFPDLWNVEKSFG 205


>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1007

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 330 PDHPAARNRMIYVNNNLYLLPSSLK 404
           PD+P +R   + ++ NLY+  SSLK
Sbjct: 686 PDNPTSRQTSMRLDGNLYIFDSSLK 710


>At1g68890.1 68414.m07884 menaquinone biosynthesis protein-related
           similar to menaquinone biosynthesis protein menD
           [SP|P17109][E. coli] ; Pfam HMM hit:
           2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic
           acid synthase / 2-oxoglutarate decarboxylase
          Length = 894

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = -1

Query: 579 HRCHKSLVKLHNQQFPSRISFQRSYKSNHLSTVCEASLNRDKVRKSAASKRAHSFGIHLL 400
           HR   ++V+  N    SR  ++RS    HL  +  A       + SA S     +  H+L
Sbjct: 683 HRVQSNIVQFANCVLKSRFPWRRSKLHGHLQALDGAIAREMSFQISAESSLTEPYVAHML 742

Query: 399 NLKAINTNYCLRI 361
           + KA+ +   L I
Sbjct: 743 S-KALTSKSALFI 754


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,212,436
Number of Sequences: 28952
Number of extensions: 258339
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)