Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j14
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0011 + 20217882-20217989,20218085-20218272,20218355-202184... 58 5e-09
08_01_1029 - 10419090-10419476,10419721-10419822,10420367-104204... 31 0.84
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 31 1.1
01_07_0366 + 43088835-43089099,43089311-43089876 29 2.6
07_03_1726 - 29062654-29064414 29 3.4
08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301... 29 4.5
07_03_0439 + 18212584-18213065,18214164-18215010 29 4.5
02_02_0186 + 7594197-7594281,7594409-7594513,7595062-7595238,759... 28 5.9
01_06_1802 + 39978634-39978880,39979016-39979431 28 5.9
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 28 7.8
>09_06_0011 +
20217882-20217989,20218085-20218272,20218355-20218421,
20218464-20218538,20219100-20219152,20219661-20219715,
20219812-20219886,20220495-20220612,20220720-20220766,
20220853-20220954
Length = 295
Score = 58.4 bits (135), Expect = 5e-09
Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 29/223 (13%)
Frame = +1
Query: 88 EIEDNERTSIRSELASLSFEELQQLKE--KIGAKVYKEALFGTKEKVNVPPKVFKRENKN 261
E + + + LA + F ELQ+ + +G + + A K+ +R +K
Sbjct: 47 ESDSDAERELERALADVPFGELQRARADGSLGGRGFSAAAAAQKKA--------RRASKK 98
Query: 262 RPREISSK-KPVPVVQVAHVKKKE-------------------------VRDPRFDPLCG 363
RP EIS+K +P ++ V KKE VRDPRF+P+ G
Sbjct: 99 RPMEISTKVRPPRFREIIQVPKKEQQPVGFSSIDYYSYLVVENWSNVYVVRDPRFEPVYG 158
Query: 364 EFDKKQFSQNYGFLSELRMKDIKAARQE-LRETTDPEKQIKXXXXXXXXNDQHKACKRNK 540
DK+ F + Y FL + + K Q+ ++++ DP + + Q ++ +
Sbjct: 159 PVDKEGFRKRYNFLFDDELPAEKEKLQKSIKKSKDPNAIEEMKSRITWIDKQLRSHPKKN 218
Query: 541 LDREVAQKNRDDIEKQFREGKQPHFKNKSELRVEALVKQYESL 669
++ E+ +++ + + GK+P++ KSE+R L+ +Y L
Sbjct: 219 VESEILREHIKKEREATKTGKRPYYLKKSEIRERKLMNKYNEL 261
>08_01_1029 -
10419090-10419476,10419721-10419822,10420367-10420459,
10420542-10420754,10421625-10421654
Length = 274
Score = 31.1 bits (67), Expect = 0.84
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 14/167 (8%)
Frame = +1
Query: 148 ELQQLKEKIGAKVYKEALFGTKEKV-NVPPK---VFKRENKNRPREISSKKPVPVVQV-A 312
EL Q + G++ Y + + K +VPP +FK + + + + Q+ A
Sbjct: 92 ELVQYHQMTGSRSYVAQCYVMQTKFKDVPPTAIDIFKDTHCSSKSGFNENAKDAIAQMEA 151
Query: 313 HVKK--KEVRDPR--FDPLCGEFDKKQFSQNYGFLSELRMKDIKAAR-----QELRETTD 465
+V + +E +DP+ + + K F +N G S K+ KAA +EL
Sbjct: 152 YVAQPTEEGKDPKTPVEAVAHVLPKSTFLRNVGMQSTEMKKNAKAAAMNDHVRELESELH 211
Query: 466 PEKQIKXXXXXXXXNDQHKACKRNKLDREVAQKNRDDIEKQFREGKQ 606
EK + D HK + K EVA+KN ++ EK +G +
Sbjct: 212 AEK-MGSARMQLQIADLHKQLEDQK---EVARKNEEETEKLRHQGSE 254
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 61 EDNEDSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKVNVPPKV 240
E++ED + D++ED E + + + E ++K K+ EA+ G+K+KV K+
Sbjct: 95 EEDEDEYEDDVED-EDEEVEEDDDNDFMEPALKVKRKVPQNRKTEAMQGSKKKVASKQKL 153
Query: 241 FK 246
K
Sbjct: 154 TK 155
>01_07_0366 + 43088835-43089099,43089311-43089876
Length = 276
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 28 IQYLLLKMSCSEDNEDSHVDEIEDNERTSIRSELASLSFEELQQ 159
++ L LK + ++D H D +D++R S S +S S LQQ
Sbjct: 156 LRKLKLKQQKQQQSDDHHNDNDDDDDRNSSSSSSSSNSNSNLQQ 199
>07_03_1726 - 29062654-29064414
Length = 586
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 61 EDNEDSHVDEIEDNERTSIRSELASLSFEELQQ 159
+D++D VD+IE+ ER R + +ELQQ
Sbjct: 63 DDDDDDDVDDIEELERRMWRDRVRHKRLKELQQ 95
>08_02_1512 +
27627740-27629009,27629111-27629256,27629842-27630101,
27630346-27630412,27630511-27630545,27630818-27631587,
27631633-27631793
Length = 902
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 508 NDQHKACKRNKLDREVAQKNRDDIEKQFREGKQPHFKNKSELRVEALV 651
ND + + + E A K+ D+ K GK P+++ S L+V +++
Sbjct: 381 NDDVEVVEEIRSQFEHAAKSAFDVSKVLEVGKMPYYQKSSGLKVSSMM 428
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = +1
Query: 538 KLDREVAQKNRD-DIEKQFREGKQPHFKNK-SELRVEALVKQYES 666
K++REV ++ ++ +I K+ R+ K SE +++ L+KQY+S
Sbjct: 359 KIEREVEERRKNREIAKKTRDWASAIDSTKRSEAKIDDLIKQYDS 403
>02_02_0186 +
7594197-7594281,7594409-7594513,7595062-7595238,
7595716-7595886,7596198-7596289,7596302-7596407,
7597516-7597601,7597861-7598501,7599065-7599107
Length = 501
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +1
Query: 202 FGTKEKVNVPPKVFKRENKNRPREISSKKPV----PVVQVAHVKKKEVRDPRFDP 354
+G+ E V KV K ++R RE S + P + A VK + DP++DP
Sbjct: 420 YGSSETPQVSSKVPKDRLRHRHREKSGEAVYGTSHPEPKPAEVKPADYSDPKYDP 474
>01_06_1802 + 39978634-39978880,39979016-39979431
Length = 220
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 205 GTKE-KVNVPPKVFKRENKNRPREISSKKPVPVVQVAHVKKKEVRDP 342
GT+ +++ P + R NRPR ++ + PVVQ A + + P
Sbjct: 60 GTRSLRMHASPPDYGRRRTNRPRRVARTRSPPVVQEAEREPPAPQQP 106
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +1
Query: 52 SCSEDNEDSHVDEIEDNERTSIRSE-LASLSFEELQQLKEKI----GAKVYKEALFGTKE 216
S S+D+EDS + + ER R+E LA+++ + + +E + G K E L +E
Sbjct: 153 SGSDDSEDSEEERRREEERRRRRAERLAAMAARAIAEREEAVAKLEGEKASLEKLLAERE 212
Query: 217 K 219
K
Sbjct: 213 K 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.130 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,056,952
Number of Sequences: 37544
Number of extensions: 241943
Number of successful extensions: 636
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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