Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j14
(671 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 4e-14
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 34 0.12
SB_18988| Best HMM Match : Brix (HMM E-Value=3.4e-06) 30 1.5
SB_22941| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_40042| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5) 29 2.6
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3) 28 6.0
SB_55612| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_44471| Best HMM Match : TFIIF_beta (HMM E-Value=1.3) 28 6.0
SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038) 28 6.0
SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36) 28 6.0
SB_52296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_4107| Best HMM Match : M (HMM E-Value=8e-22) 28 7.9
SB_58468| Best HMM Match : rve (HMM E-Value=1.2e-11) 28 7.9
SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 75.4 bits (177), Expect = 4e-14
Identities = 35/112 (31%), Positives = 68/112 (60%)
Frame = +1
Query: 334 RDPRFDPLCGEFDKKQFSQNYGFLSELRMKDIKAARQELRETTDPEKQIKXXXXXXXXND 513
RDPRFD L G+F++ F ++Y F++++R+++ K+ +EL++T + EK+ N
Sbjct: 3 RDPRFDDLSGKFNEDLFRKSYSFVNDIRVEEKKSVEKELKKTKNAEKRKNLNDFLKVMNQ 62
Query: 514 QHKACKRNKLDREVAQKNRDDIEKQFREGKQPHFKNKSELRVEALVKQYESL 669
Q ++ K + RE +K ++ + ++GK+P + KSEL+ L ++Y+ L
Sbjct: 63 QERSRKSAEAKRESKKKIKETERELVQKGKKPFYLRKSELKKLELAEKYKEL 114
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 33.9 bits (74), Expect = 0.12
Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Frame = +1
Query: 244 KRENKNRPREISSKKPVPVVQ-VAHVKKKEVRDPRFDPLCGEFDKKQFSQNYGFLSELRM 420
K E + R RE KK + + ++KE + R L + K++ + E R+
Sbjct: 387 KEEEEKRKREGEVKKRKEEEERLVEARRKEQEEKR--KLEEQKRKEEEDRRRKEAEEKRI 444
Query: 421 KDIKAARQELRETTDPEKQIKXXXXXXXXNDQHKACKRNKLDREVAQKNRDDIEKQFREG 600
K+ +A +E R + D E+ + +Q +A +RN++ +E +K + +++ +E
Sbjct: 445 KEEEARLKEERRSKDEEENRRKADEERKRKEQEEA-ERNRVVQEEKRKIEQEGKQRKKES 503
Query: 601 KQPHFKNKSE 630
++ +NK E
Sbjct: 504 RKQEEQNKKE 513
Score = 33.1 bits (72), Expect = 0.21
Identities = 44/205 (21%), Positives = 88/205 (42%), Gaps = 4/205 (1%)
Frame = +1
Query: 61 EDNEDSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKVNVPPKV 240
++ E + ++E++ + + +EL +E L+E V LF + +
Sbjct: 227 QEQEKETIQQLEEDFKAQL-NELEVEKAKEQTALEEMKSFTVKSIILFS--RVYSKYKDI 283
Query: 241 FKRENKNRPREISSKKPVPVVQVAHVKKKEVRDPRFDPLCGEFDKKQFSQNYGFLSELRM 420
+ N+ R RE ++ + +V +++K R + E K++ ++ E +
Sbjct: 284 LEARNRQRKRE-REEELERIERVEEMQRKTQEKKRIEE---EEQKRKEAE------EKKA 333
Query: 421 KDIKAARQELRETTDPEKQIKXXXXXXXXNDQHKACKRNKL----DREVAQKNRDDIEKQ 588
K+I+ R E + EK+ K +Q + K K DR+ + +++ EK+
Sbjct: 334 KEIEQRRMEEEIKKEEEKKRKEAEEKRVKEEQIRLEKERKRKEADDRQREEARKEEEEKR 393
Query: 589 FREGKQPHFKNKSELRVEALVKQYE 663
REG+ K + E VEA K+ E
Sbjct: 394 KREGEVKKRKEEEERLVEARRKEQE 418
>SB_18988| Best HMM Match : Brix (HMM E-Value=3.4e-06)
Length = 224
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 319 KKKEVRDPRFDPLCGEFDKKQFS-QNYGFLSELRMKDIKAARQELRETTDPEKQ 477
K K+V++ +DP + K Q+Y L +MK +K +++ +ETT +K+
Sbjct: 167 KAKKVKNVDYDPFGTKSGKVHMQRQDYSKLQTRKMKGLKRGQEDDKETTPTKKK 220
>SB_22941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +1
Query: 103 ERTSIRSELASLSFEELQQ-LKEKIGAKVYKEALFGTKEK----VNVPPKVFKRENKNRP 267
+R+ R+ A E + L E++ + Y + + E+ V PKV + N ++P
Sbjct: 16 QRSEARNHKAQSVVERANRTLSERLYSHQYAQEMLSENERSREWVKRLPKVLEAMN-SKP 74
Query: 268 REISSKKPVPVVQVAHVKKKEVRDPR 345
R IS K+P V++ V K V R
Sbjct: 75 RRISGKEPDKAVRLKEVDVKPVEYKR 100
>SB_40042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +1
Query: 100 NERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKVNVPPKVFKRENK 258
N + IR+ +A ++F+E + AK+ + A+FG EK NV ++ +N+
Sbjct: 14 NIASRIRANVAQVTFDEFH----RYSAKIIRRAVFGVDEKGNVRNRLRFDDNR 62
>SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)
Length = 289
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/109 (22%), Positives = 39/109 (35%)
Frame = +1
Query: 313 HVKKKEVRDPRFDPLCGEFDKKQFSQNYGFLSELRMKDIKAARQELRETTDPEKQIKXXX 492
H K E D +P+ E D+K S + R D + R + E TD + K
Sbjct: 59 HFNKHEKGDQ--NPMATELDEKAISSRTTSANRTRRPD--SYRSKNSENTDSHRSRKSES 114
Query: 493 XXXXXNDQHKACKRNKLDREVAQKNRDDIEKQFREGKQPHFKNKSELRV 639
D H++C + E++ +R G + K + V
Sbjct: 115 HQSRKPDSHRSCISDSYRSEMSGSLTSSKSNSYRSGMSDSDRFKEDNNV 163
>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 29.5 bits (63), Expect = 2.6
Identities = 29/102 (28%), Positives = 44/102 (43%)
Frame = +1
Query: 145 EELQQLKEKIGAKVYKEALFGTKEKVNVPPKVFKRENKNRPREISSKKPVPVVQVAHVKK 324
EE++Q+KE++G Y EA K+ + NK +P + K + H
Sbjct: 324 EEIEQIKEEVGYLRYMEA----KQLL----------NKTKPNYKEAYKILEEAAFVHNYT 369
Query: 325 KEVRDPRFDPLCGEFDKKQFSQNYGFLSELRMKDIKAARQEL 450
K F L G+ + FS+ Y L +L K AA+Q L
Sbjct: 370 KAQEMVAFSYLFGDHLPRNFSKAYEVLIDLANKGSPAAQQGL 411
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 124 ELASLSFEELQQLKEKIGAKVY-KEALFGTKEKVNVPPKVFKRENKNRPREISSKKPVPV 300
EL L ++ L AKV +EA + PPK+ KR ++ ++++ PV
Sbjct: 607 ELLQLMYDHLMCKGLTETAKVLLREADLPNNRLIETPPKLAKRLQPHQSEKLATPAPVSS 666
Query: 301 VQVAHVKKKEVRDP 342
Q + K DP
Sbjct: 667 PQTPTLSKYRFSDP 680
>SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 743
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = +1
Query: 385 SQNYGFLSELRMKDIKAARQELRETTDPEKQIKXXXXXXXXNDQHKACKRNKLDREVAQK 564
+ N ++L+ K I+ A+ L + + + Q++ RNK+DR + +
Sbjct: 312 NHNTAIANKLKNKSIRKAKHGLHKNSSTAVSSEDLPATTTDGQQNRRRHRNKIDRVLGMR 371
Query: 565 NRDDIEKQF 591
+ + E +F
Sbjct: 372 QKSNSEYEF 380
>SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +1
Query: 40 LLKMSCSEDNEDSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGTK 213
LLK + ++E DE DN+ + R A +++ K++ + K ++G+K
Sbjct: 250 LLKYNTKNEDEPMDSDETVDNDDVTERKSSAKRKANQIENDKDEASDRKKKVCMYGSK 307
>SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)
Length = 416
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 520 KACKRNKLDR-EVAQKNRDDIEKQFREGKQPHFKNKSELRVEALVKQYES 666
K KR +R E A+K D K++R+ + K ELR+E YE+
Sbjct: 342 KESKRRDRERVEKAEKRASDQHKKYRQARSLARKRDEELRLEREGTTYEA 391
>SB_55612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 271 EISSKKPVPVVQVAHVKKKEVRDPRFDPLCGEF 369
E +++ P PV+++ H + E+ D + LCG F
Sbjct: 17 EDNNQDPRPVIRLRHAQLAEIWDEKNTGLCGRF 49
>SB_44471| Best HMM Match : TFIIF_beta (HMM E-Value=1.3)
Length = 670
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 520 KACKRNKLDR-EVAQKNRDDIEKQFREGKQPHFKNKSELRVEALVKQYES 666
K KR +R E A+K D K++R+ + K ELR+E YE+
Sbjct: 596 KESKRRDRERVEKAEKRASDQHKKYRQARSLARKRDEELRLEREGTTYEA 645
>SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038)
Length = 676
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 229 PPKVFKRENKNRPREISSKKPVPVVQVAHVKKKEVRDPRFDPLCGEFDKKQF 384
PPK +K+E N + I + +P A +++K +R F GE KK F
Sbjct: 34 PPKYYKKEGDNGCKLIDTCSEIP--DCASIREKGLRFYTFSLRKGEESKKLF 83
>SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)
Length = 1021
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/60 (23%), Positives = 26/60 (43%)
Frame = +1
Query: 31 QYLLLKMSCSEDNEDSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGT 210
QY C D + +D + N+RT + E A+ E+L++ + ++F T
Sbjct: 822 QYFSRLSECDVDGLKTMIDALNTNQRTVLAREAANQGTEQLRESNFAHALSFFSVSVFAT 881
>SB_52296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 232 PKVFKRENKNRPREISSKKPVPVV 303
P + + KN PR+IS+KKP VV
Sbjct: 256 PMIQNVKKKNTPRKISNKKPFSVV 279
>SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 49 MSCSEDNE-DSHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKVN 225
M C + + D+ +D ++DNE T I A + E +Q+K + G + G ++
Sbjct: 755 MDCEKYKKVDAKID-VKDNEETLIEKVDAKSNGNENEQMKTEQGDAGIDDNDEGERKTAK 813
Query: 226 VPPKVFKRENKNRPRE 273
V K ENK R+
Sbjct: 814 VDAKNNDNENKQMNRD 829
>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
Length = 2039
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +1
Query: 376 KQFSQNYGFLSELRMKDIKAARQELRETTDPEKQIKXXXXXXXXN-----DQHKACKRNK 540
KQ+ Q L + K LRE ++ + Q+K D H+ + +
Sbjct: 1046 KQYQQEAAALKTQIQELTKVKENALREISELKLQLKMAEEARDGVRRELIDAHRKIREGE 1105
Query: 541 LDREVAQKNRDDIEKQFRE 597
REVA+K D+++Q ++
Sbjct: 1106 EAREVARKENTDLKRQLKD 1124
>SB_58468| Best HMM Match : rve (HMM E-Value=1.2e-11)
Length = 257
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Frame = +1
Query: 103 ERTSIRSELASLSFEELQQ-LKEKIGAKVYKEALF----GTKEKVNVPPKVFKRENKNRP 267
+R+ ++ A E + + L E++ + Y + + ++E V PKV + N +P
Sbjct: 84 QRSEAKNHKAQSVVERVNRTLSERLYSHQYAQEMLLENERSREWVKRLPKVLEAMN-TKP 142
Query: 268 REISSKKPVPVVQVAHVKKKEVRDPR 345
R IS K+P V++ V K V R
Sbjct: 143 RRISGKEPDKAVRLKEVDVKPVEYKR 168
>SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +1
Query: 406 SELRMKDIKAARQELRETTDPEKQIKXXXXXXXXNDQHKACKRNKLDREVAQKNRDDIEK 585
S LR K+ +A E +ET++ +Q+K + K +R + +EK
Sbjct: 360 SSLREKN-EACLSECKETSEEIEQLKVDLAKYKEAAEKDLDKALSEERAKFTEEYAKLEK 418
Query: 586 QFREGKQPHFKNKSELR 636
QF + ++ H K LR
Sbjct: 419 QFNDARREHMKAVVSLR 435
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.130 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,030,353
Number of Sequences: 59808
Number of extensions: 304493
Number of successful extensions: 1020
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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