Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j14
(671 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12650.1 68414.m01469 expressed protein similar to KED (GI:80... 97 7e-21
At2g40090.1 68415.m04927 ABC1 family protein contains Pfam domai... 32 0.40
At1g75150.1 68414.m08729 expressed protein ; expression supporte... 31 0.70
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 30 1.2
At5g60910.1 68418.m07641 agamous-like MADS box protein AGL8 / FR... 30 1.6
At4g02630.1 68417.m00357 protein kinase family protein contains ... 30 1.6
At5g51650.1 68418.m06404 hypothetical protein 29 2.1
At1g03910.1 68414.m00376 expressed protein low similarity to cac... 29 2.8
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 29 3.7
At5g10500.1 68418.m01216 kinase interacting family protein simil... 28 4.9
At4g26780.1 68417.m03857 co-chaperone grpE family protein simila... 28 4.9
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 28 4.9
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 28 4.9
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 28 6.5
At2g27670.1 68415.m03353 hypothetical protein contains Pfam prof... 28 6.5
At4g27595.1 68417.m03964 protein transport protein-related low s... 27 8.6
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 27 8.6
>At1g12650.1 68414.m01469 expressed protein similar to KED
(GI:8096269) [Nicotiana tabacum]; similar to rRNA
processing protein EBP2 (SP:P36049) [Saccharomyces
cerevisiae]
Length = 248
Score = 97.5 bits (232), Expect = 7e-21
Identities = 67/203 (33%), Positives = 113/203 (55%), Gaps = 8/203 (3%)
Frame = +1
Query: 85 DEIEDNERTSIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKVNVPPKVFK----RE 252
++ E++E S S S S EE + KE +++K G+K P +V K R
Sbjct: 17 EDSEEDEDLSCSS--VSSSDEEEETEKELTFEEIHKLRADGSKAVPWKPNQVKKTGRARA 74
Query: 253 NKNRPREISSKKPVPVV-QVAHVKKKEVRDPRFDPLCGEFDKKQFSQNYGFLSELRMK-D 426
NKNRP E+SSKKPV +V HV KKEVRDPRF+ L G D + F + Y F E ++ +
Sbjct: 75 NKNRPMEVSSKKPVSRYREVVHVPKKEVRDPRFNQLGGTLDVEGFRKRYNFFFEDKLPVE 134
Query: 427 IKAARQELRETTDPEK--QIKXXXXXXXXNDQHKACKRNKLDREVAQKNRDDIEKQFREG 600
+ +++L++T +PE+ ++K +++ +NK + +++ + +EG
Sbjct: 135 REELKKKLKKTKNPEEIDELKNQLTYVEKMLKYEPSTQNK-GAAILTEHKKKEREAAKEG 193
Query: 601 KQPHFKNKSELRVEALVKQYESL 669
K+P++ KSE+R + L+++Y SL
Sbjct: 194 KRPYYLKKSEIRKQTLIEKYNSL 216
>At2g40090.1 68415.m04927 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 538
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = -2
Query: 175 QFFPSIVEVLQKIRKPILIVLTSFRCLQFRPHENLHYLHCSSFLVVG 35
Q+F I E+L+++ + IL++L + CL+ +E + SFL++G
Sbjct: 439 QYFSEISELLRRLPRVILLMLKTNDCLRSVNNELMQGSSLESFLIIG 485
>At1g75150.1 68414.m08729 expressed protein ; expression supported
by MPSS
Length = 753
Score = 31.1 bits (67), Expect = 0.70
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
Frame = +1
Query: 271 EISSKKPVPVVQVAHVKKKEVRDPRFDPLCGEFDK--KQFSQNYGFLSELRMKDIKAA-- 438
EIS + ++V+ + E DP F+ EFD ++ + E+R+ + K A
Sbjct: 112 EISDSETRDEIRVSETTESEKEDPDFETTVHEFDSPMEELGEKGEDEEEIRVPETKEAGK 171
Query: 439 RQELRETTDPE-KQIKXXXXXXXXNDQHKACKRNKLDREVAQKNRDDIEKQFREGKQPHF 615
++ + ET D E K+ K +D + + +K R + Q R Q
Sbjct: 172 KRPIVETRDGEGKERKRDKKRKKKSDDFDELPVSTASMNMTKKERREYLDQLRAENQRLL 231
Query: 616 KNKSELRVEA 645
+ + EA
Sbjct: 232 RETRDAAFEA 241
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 30.3 bits (65), Expect = 1.2
Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 27/202 (13%)
Frame = +1
Query: 61 EDNEDSH--VDEIEDNERTSIRSELASLSFEELQQLKEKIG----AKVYKEALFGTKEKV 222
E++ SH VD +DN+ S S+ S S +E +KE+ G + + K K+
Sbjct: 719 ENDNGSHENVDVAQDNDLNSRHSKRRSKSLDEDYDMKERRGRSRSRSLETKNRSSRKNKL 778
Query: 223 NVPPKVFKRENKNRPREISSKKPVPVVQVAHVKK----------------KEVRDPRFDP 354
+ R ++R + + K+ + KK K+ RD R P
Sbjct: 779 DEDRNTGSRRRRSRSKSVEGKRSYNKETRSRDKKSKRRSGRRSRSPSSEGKQGRDIRSSP 838
Query: 355 LCGEFDK---KQFSQNYGFLSELRMKDIKAARQELRETTDP--EKQIKXXXXXXXXNDQH 519
+ K K+ S++ + +D ++ R E ++ P +K+ ++ H
Sbjct: 839 GYSDEKKSRHKRHSRSRSIEKKNSSRDKRSKRHERLRSSSPGRDKRRGDRSLSPVSSEDH 898
Query: 520 KACKRNKLDREVAQKNRDDIEK 585
K KR+ + V +K D EK
Sbjct: 899 KIKKRHSGSKSVKEKPHSDYEK 920
>At5g60910.1 68418.m07641 agamous-like MADS box protein AGL8 /
FRUITFULL (AGL8) NAP1-1, Nicotiana tabacum,
EMBL:AF009126; identical to SP:Q38876 Agamous-like MADS
box protein AGL8 (Floral homeotic protein AGL8)
(FRUITFULL){Arabidopsis thaliana} PMID:9502732,
PMID:10648231; identical to cDNA agamous-like 8 (AGL8)
GI:1004364
Length = 242
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 76 SHVDEIEDNERTSIRSELASLSFEELQQLKEKIGAKV 186
+ V+ +E N+R + +L SLS +ELQ L+ ++ A +
Sbjct: 100 ARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAI 136
>At4g02630.1 68417.m00357 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 492
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 238 VFKRENKNRPREISSKKPVPVVQVAHVKKKEVRDP 342
+++R NKN+ E SSK +V V + +E+R P
Sbjct: 46 IYRRSNKNKSLESSSKSNHTIVPVVSKEIQEIRPP 80
>At5g51650.1 68418.m06404 hypothetical protein
Length = 206
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/86 (25%), Positives = 37/86 (43%)
Frame = +1
Query: 367 FDKKQFSQNYGFLSELRMKDIKAARQELRETTDPEKQIKXXXXXXXXNDQHKACKRNKLD 546
FD K + G + +L+ K ++E + + ++ ND+ + KL
Sbjct: 111 FDTKILEEEVGIIWDLKEKKKDKKKEEEEDDFGSKIKLTTADLRKLANDKQQL---KKLL 167
Query: 547 REVAQKNRDDIEKQFREGKQPHFKNK 624
RE +KN + IEK +E K K K
Sbjct: 168 REFEKKNDEFIEKLMKEKKLEKNKRK 193
>At1g03910.1 68414.m00376 expressed protein low similarity to cactin
[Drosophila melanogaster] GI:7673675; expression
supported by MPSS
Length = 672
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +1
Query: 148 ELQQLKEKIGAKVYKEALFGTKEKVNVPPKVFKRENKNRPRE 273
EL+ +K +GA +A+FG+ +VN+ +V+ +K RPR+
Sbjct: 516 ELKAMKA-MGAMEEGDAIFGSNAEVNLDSEVYWWHDKYRPRK 556
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 28.7 bits (61), Expect = 3.7
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Frame = +1
Query: 373 KKQFSQNYGFLSELRMKDIKAARQELRETTDPEKQIKXXXXXXXXNDQHKACKRNKLDR- 549
+KQ + +L E R++++ ++ELR+ +KQ K + H A R KL++
Sbjct: 186 RKQIIEVVHYLDE-RLRELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDA--REKLEQV 242
Query: 550 EVAQ-KNRDDIEKQFREGKQPHFKNKS-ELRVEALVKQYESL 669
EVA+ K ++ K + ++ +KS + ++ L K+ ++L
Sbjct: 243 EVARTKASEESTKMYDRVEKAQDDSKSLDESLKELTKELQTL 284
>At5g10500.1 68418.m01216 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 848
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 553 VAQKNRDDIEKQFREGKQPHFKNKSELRVEALVKQYESL 669
+ QKN+D + R +P +K+ SE+R E V +SL
Sbjct: 673 IKQKNQDGGKNTLRSNVRPIYKHLSEIRTEMTVWLEKSL 711
>At4g26780.1 68417.m03857 co-chaperone grpE family protein similar
to chaperone GrpE type 2 [Nicotiana tabacum] GI:3851640;
contains Pfam profile PF01025: co-chaperone GrpE
Length = 327
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +1
Query: 52 SCSEDNEDSHVDEIEDNERTSI---RSELASLSFEELQQLKEKIGAKVYKE 195
S SE + +S DE+ ++ + + EL S EE++QLK+K+ + Y E
Sbjct: 126 SSSESDSESDDDELSADDLVKLVAEKEELLSEKEEEIKQLKDKV-LRTYAE 175
>At4g14760.1 68417.m02271 M protein repeat-containing protein contains
Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 28.3 bits (60), Expect = 4.9
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Frame = +1
Query: 373 KKQFSQNYGFLSELRMKDIKAARQELRETTDPEKQIKXXXXXXXXNDQHKACKRNKLDRE 552
+KQ S NY +E R+ D++ LRE K+ N Q + KL +
Sbjct: 740 EKQESANYKRSTESRLADLQKNVSFLREECRSRKREYEDELDRVVNKQVEIFILQKLIED 799
Query: 553 VAQKNRDDIEKQFREGKQPHFKNK--SELRVEALVKQYES 666
+ QKN + + + + F K +EL E L +Q E+
Sbjct: 800 LEQKNFSLLIECQKHVEASEFSEKLIAELESENLEQQMEA 839
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 28 IQYLLLKMSCSEDNEDSHVDEIEDNERTS-IRSELASLSFEELQQLKEKIGAKVYKEALF 204
+Q + ++S + D ++ + E+ + + I +E A + EL +LK +G+K KEA+
Sbjct: 166 LQRVKHELSMTADAKNKALSHAEEATKIAEIHAEKAEILASELGRLKALLGSKEEKEAIE 225
Query: 205 GTK 213
G +
Sbjct: 226 GNE 228
>At3g19050.1 68416.m02420 kinesin motor protein-related contains
Pfam profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 58 SEDNEDSHVDEIEDNERTSIRSELASL-SFEELQQLKEKIGAKV 186
S + D+H DEIE N ++R+ L SL S + L+ K + G+K+
Sbjct: 8 SRRDSDNHDDEIE-NVPENLRASLLSLTSNDSLKNPKHECGSKI 50
>At2g27670.1 68415.m03353 hypothetical protein contains Pfam profile
PF02713: Domain of unknown function DUF220
Length = 293
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 97 DNERT-SIRSELASLSFEELQQLKEKIGAKVYKEALFGTKEKVNVPP 234
D ER RS + +++ K +IG+KV E +F +NVPP
Sbjct: 213 DQERLCKSRSRINEEEYKKCSDGKGRIGSKVTMEQIFQPCSLLNVPP 259
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 70 EDSHVDEIEDNERTSIRSELASLSFEELQQLKEKI 174
E S +D+ +N+ +R A+ EEL ++KE +
Sbjct: 995 EQSWIDKGNENQELKVREASAAKRIEELSKMKESL 1029
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +1
Query: 298 VVQVAHVKKKEVRDPRFDPLCGEFDKKQFSQNYGFLSELRMKDIKAARQELRETTD 465
V+ +A + ++ DP G FD+K F G + + + + A ++ + E D
Sbjct: 549 VITIASTNRPDILDPAL-VRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMAEDLD 603
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.130 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,189,685
Number of Sequences: 28952
Number of extensions: 224423
Number of successful extensions: 686
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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