Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j13
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 116 2e-26
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 112 2e-25
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 110 1e-24
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 109 2e-24
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 109 2e-24
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 107 7e-24
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 106 1e-23
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 105 2e-23
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 104 5e-23
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 101 3e-22
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 95 4e-20
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 89 3e-18
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 88 6e-18
At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3) id... 74 1e-13
At3g03290.1 68416.m00326 universal stress protein (USP) family p... 31 0.54
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 29 3.8
At5g63320.1 68418.m07946 expressed protein 28 6.7
At5g28810.1 68418.m03542 hypothetical protein 27 8.8
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 27 8.8
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 27 8.8
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa... 27 8.8
At2g23190.1 68415.m02770 cytochrome P450, putative Similar to C... 27 8.8
At1g64430.1 68414.m07302 expressed protein 27 8.8
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 116 bits (278), Expect = 2e-26
Identities = 57/142 (40%), Positives = 88/142 (61%), Gaps = 1/142 (0%)
Frame = +2
Query: 80 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 256
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP--- 61
Query: 257 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 436
ECRY ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G
Sbjct: 62 ADECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDG 116
Query: 437 VQKYIQATDLSEASQEAVEEKL 502
+Q +QATD +E + ++ ++
Sbjct: 117 IQVELQATDPTEMDLDVLKSRV 138
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 112 bits (269), Expect = 2e-25
Identities = 56/132 (42%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
Frame = +2
Query: 80 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 256
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VG+ YE+F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP--- 61
Query: 257 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 436
ECRY ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G
Sbjct: 62 ADECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDG 116
Query: 437 VQKYIQATDLSE 472
+Q +QATD +E
Sbjct: 117 IQVELQATDPTE 128
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 110 bits (264), Expect = 1e-24
Identities = 54/139 (38%), Positives = 85/139 (61%), Gaps = 1/139 (0%)
Frame = +2
Query: 89 VTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGTGE 265
+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L E
Sbjct: 1 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP---ADE 57
Query: 266 CRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK 445
CRY ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q
Sbjct: 58 CRYAIYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQV 112
Query: 446 YIQATDLSEASQEAVEEKL 502
+QATD +E + ++ ++
Sbjct: 113 ELQATDPTEMDLDVLKSRV 131
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 109 bits (261), Expect = 2e-24
Identities = 55/143 (38%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Frame = +2
Query: 80 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 253
ASG+ V+D CK + E+K + +R++VF I DEK Q+ +E +G Y+ F +
Sbjct: 5 ASGMHVNDECKIKFLELKAKRTYRFIVFKI-DEKAQQVQIEKLGNPEETYDDFTSSIPDD 63
Query: 254 GTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLV 433
ECRY ++DF++T T + +K K+F ++W PDT++V+ KMLY+SS D K+ +
Sbjct: 64 ---ECRYAVYDFDFT-----TEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREME 115
Query: 434 GVQKYIQATDLSEASQEAVEEKL 502
G+Q +QATD SE S + ++ +L
Sbjct: 116 GIQVELQATDPSEMSLDIIKGRL 138
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 109 bits (261), Expect = 2e-24
Identities = 56/143 (39%), Positives = 90/143 (62%), Gaps = 2/143 (1%)
Frame = +2
Query: 80 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 253
ASG+ VSD CK + E+K + +R++VF I DEK Q+ ++ +G YE F + +
Sbjct: 5 ASGMHVSDECKLKFLELKAKRNYRFIVFKI-DEKAQQVMIDKLGNPEETYEDFTRSIPED 63
Query: 254 GTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLV 433
ECRY ++D+++T T E +K K+F ++W PDT++V+ KMLY+SS D K+ L
Sbjct: 64 ---ECRYAVYDYDFT-----TPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELD 115
Query: 434 GVQKYIQATDLSEASQEAVEEKL 502
G+Q +QATD SE S + ++ ++
Sbjct: 116 GIQVELQATDPSEMSLDIIKGRV 138
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 107 bits (257), Expect = 7e-24
Identities = 53/140 (37%), Positives = 87/140 (62%)
Frame = +2
Query: 80 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 259
ASG+ V D CK + E+K + +R+++F I D +Q+ VE +G Y+ F L
Sbjct: 5 ASGMAVEDECKLKFLELKAKRNYRFIIFRI-DGQQVVVEKLGSPQENYDDFTNYLPPN-- 61
Query: 260 GECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGV 439
ECRY ++DF++T T+E +K K+F ++W PD+++V+ KM+Y+SS D K+ L G+
Sbjct: 62 -ECRYAVYDFDFT-----TAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGI 115
Query: 440 QKYIQATDLSEASQEAVEEK 499
Q +QATD SE S + ++ +
Sbjct: 116 QVELQATDPSEMSLDIIKSR 135
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 106 bits (255), Expect = 1e-23
Identities = 55/140 (39%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Frame = +2
Query: 83 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGT 259
SG+ V+D KTT+ E+++ K HRYVVF I + +K++ VE G Y+ FL L
Sbjct: 13 SGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDN-- 70
Query: 260 GECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGV 439
+CRY ++DF++ TSE +K K+F +W P T+ ++ K+LYS+S D L + L G+
Sbjct: 71 -DCRYAVYDFDFV-----TSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGI 124
Query: 440 QKYIQATDLSEASQEAVEEK 499
IQATD +E E + E+
Sbjct: 125 HYEIQATDPTEVDLEVLRER 144
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 105 bits (253), Expect = 2e-23
Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Frame = +2
Query: 80 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 256
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 257 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 436
ECRY +FDF++ +SE + ++F ++W PDTA+V+ KM+Y+SS D K+ L G
Sbjct: 62 ADECRYAIFDFDFV-----SSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDG 116
Query: 437 VQKYIQATDLSEASQEAVEEK 499
+Q +QATD +E + + +
Sbjct: 117 IQVELQATDPTEMDLDVFKSR 137
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 104 bits (250), Expect = 5e-23
Identities = 54/140 (38%), Positives = 83/140 (59%)
Frame = +2
Query: 80 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 259
ASG+ V D CK + E+K + R +V+ I D KQ+ VE +GE Y+ F L
Sbjct: 5 ASGMAVHDDCKLKFMELKAKRTFRTIVYKIED-KQVIVEKLGEPEQSYDDFAASLP---A 60
Query: 260 GECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGV 439
+CRY ++DF++ T+E +K K+F ++W PDTAKV+ KM+Y+SS D K+ L G+
Sbjct: 61 DDCRYCIYDFDFV-----TAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGI 115
Query: 440 QKYIQATDLSEASQEAVEEK 499
Q +QATD +E + + +
Sbjct: 116 QVELQATDPTEMGLDVFKSR 135
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 101 bits (243), Expect = 3e-22
Identities = 50/137 (36%), Positives = 83/137 (60%)
Frame = +2
Query: 89 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGEC 268
+ V D CK + E+K + +R+++F I D +Q+ VE +G + Y+ F L EC
Sbjct: 1 MAVEDECKLKFLELKSKRNYRFIIFRI-DGQQVVVEKLGNPDETYDDFTASLP---ANEC 56
Query: 269 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 448
RY +FDF++ T E +K K+F ++W PD+++V+ KM+Y+SS D K+ L G+Q
Sbjct: 57 RYAVFDFDFI-----TDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVE 111
Query: 449 IQATDLSEASQEAVEEK 499
+QATD SE S + ++ +
Sbjct: 112 LQATDPSEMSFDIIKSR 128
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 95.1 bits (226), Expect = 4e-20
Identities = 46/146 (31%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Frame = +2
Query: 74 KMAS-GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQ 247
KMA+ G+ V+D C +++ ++K K HRY+VF I ++ +++ V+ VG Y + L
Sbjct: 6 KMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLP 65
Query: 248 KGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 427
+CRY +FDF++ T + +K K+F ++W P+ +K++ K+LY++S D L++
Sbjct: 66 ---VDDCRYAVFDFDFV-----TVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRV 117
Query: 428 LVGVQKYIQATDLSEASQEAVEEKLR 505
L G+ +QATD +E + ++++ +
Sbjct: 118 LEGIHYELQATDPTEMGFDIIQDRAK 143
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/138 (29%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Frame = +2
Query: 95 VSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGTGECR 271
++D CK ++ E+K K HRYVV+ + ++ +++ V+ VG Y+ L + +CR
Sbjct: 1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPED---DCR 57
Query: 272 YGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYI 451
Y +FDF+Y T + + K+F ++W P+ +++++KM+Y++S L++ L GV +
Sbjct: 58 YAVFDFDYV-----TVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYEL 112
Query: 452 QATDLSEASQEAVEEKLR 505
QATD +E + ++++ +
Sbjct: 113 QATDPTEMGFDKIQDRAK 130
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 87.8 bits (208), Expect = 6e-18
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Frame = +2
Query: 89 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETV------GERNAEYEQFLEDLQK 250
+ + D CK T+ E+K+ + R +V+ I D Q+ VE GER YE+F L
Sbjct: 1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLP- 59
Query: 251 GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL 430
ECRY + D E+ ++K+ ++W P TAK++KKM+YSS+ D K+ L
Sbjct: 60 --ADECRYAILDIEFV---------PGERKICFIAWSPSTAKMRKKMIYSSTKDRFKREL 108
Query: 431 VGVQKYIQATDLSEASQEAVEEKL 502
G+Q ATDL++ S +A+ ++
Sbjct: 109 DGIQVEFHATDLTDISLDAIRRRI 132
>At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 124
Score = 73.7 bits (173), Expect = 1e-13
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
Frame = +2
Query: 80 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 256
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 257 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 436
ECRY +FDF++ +SE + ++F ++W PDTA+ + L G
Sbjct: 62 ADECRYAIFDFDFV-----SSEGVPRSRIFFVAWSPDTAR---------------RELDG 101
Query: 437 VQKYIQATDLSEASQEAVEEK 499
+Q +QATD +E + + +
Sbjct: 102 IQVELQATDPTEMDLDVFKSR 122
>At3g03290.1 68416.m00326 universal stress protein (USP) family
protein contains Pfam profile: PF00582 universal stress
protein family
Length = 274
Score = 31.5 bits (68), Expect = 0.54
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 194 ETVGERNAEYEQFLEDLQKGGTGE 265
ET G+ +EYE+F E+ ++GG GE
Sbjct: 45 ETDGDSTSEYEEFEEEKERGGEGE 68
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 463 PLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRP 597
PL + SG + SP N TRA D T PA+ D+ +P
Sbjct: 307 PLATSSGPSGPNSVPGNSPSNIFLTRAGDRTSPAVDGMDVDEAQP 351
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 364 GHRQG*EEDVVL*LVRRSEKVPCRSSEVHPSDRPLGSVSGGRR--REAPRHRSPINSIYT 537
G ++ E +VV + +E V EVHP DR G R RE PR S+
Sbjct: 311 GDKEEQETEVVDMRKQENEVVDMGVEEVHPLDRSEGRTLSPHRKEREDPRASGNEESVSE 370
Query: 538 RARD 549
+A+D
Sbjct: 371 KAQD 374
>At5g28810.1 68418.m03542 hypothetical protein
Length = 560
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 576 GVSES-GFGFVASSCVNAVYWRSVARSFSSTA 484
G+ E+ GFG +CV + WRS + F+ TA
Sbjct: 185 GIGEACGFGKTTLTCVPLLDWRSSRKRFNFTA 216
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -3
Query: 666 PVKSIILILFVFLCNNTKRLVVSWPRVVRAGVSESGFGFVASSCVNAVYWRSVARSFS 493
PV S + + +V + N+TK+ + P + AG+ E + VN W S +SFS
Sbjct: 679 PVDSKVPMNWVKV-NSTKKTIRYHPPEIVAGLDELALATEHLAIVNRASWDSFLKSFS 735
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -2
Query: 505 AELLFDGLLRRFREVGRLDVLLNSDKGL--FQ---SVERARVQHLLLNLG 371
+ L FD LRR +E+G+ D LN D +Q S++ + H L NLG
Sbjct: 224 SHLKFDASLRRLQELGK-DSFLNMDNKFETYQKRLSIDYREILHCLDNLG 272
>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
family protein similar to C-terminal zinc-finger
[Glycine max] GI:558543; contains Pfam profile: PF00097
zinc finger, C3HC4 type (RING finger)
Length = 486
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -1
Query: 368 CPGTTTSGRASVSC*PPTCP---GTGACIQSQTGHICIPRYRPSADPR 234
C G + G +S+ P P G A ++G++C PRY ++ R
Sbjct: 217 CNGNRSDGSSSLWSQAPAVPYMHGNIATGSIESGNVCFPRYHETSSSR 264
>At2g23190.1 68415.m02770 cytochrome P450, putative Similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis thaliana];
Length = 543
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 478 RRFREVGRLDVLLNSDKGLFQSVERARVQHLLLNL 374
R R +G L++ + F SV + ++HLLL L
Sbjct: 171 RNLRRIGTLEIFSSHKLNGFLSVRKDEIRHLLLRL 205
>At1g64430.1 68414.m07302 expressed protein
Length = 559
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 589 CRQGRSVGERVRFRRELVCKCCLLAIGGAE 500
CR G S E V F + + C CL+AI A+
Sbjct: 180 CRVGISPAEEVPFGKIVRCPSCLIAIAVAQ 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,121,444
Number of Sequences: 28952
Number of extensions: 259870
Number of successful extensions: 949
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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