Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j12
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0268 - 24050721-24050971,24051112-24051276,24051479-240517... 205 3e-53
08_02_1558 + 27870327-27870332,27870890-27871163,27871438-278715... 176 1e-44
08_01_0351 + 3095639-3095995,3096134-3096187,3096407-3096490,309... 35 0.057
04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253 35 0.076
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388 34 0.100
12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193 34 0.13
05_01_0268 - 2053420-2053539,2053636-2053710,2053805-2053867,205... 33 0.31
12_02_0674 - 21745321-21746223,21746229-21747608 30 1.6
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270... 30 1.6
06_03_0021 + 15520342-15520443,15522217-15522867,15522980-155231... 29 3.8
09_04_0540 - 18420517-18420822,18420903-18421037,18421118-184212... 28 6.6
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 28 6.6
03_02_0990 - 13028011-13028114,13028182-13028554,13029488-130296... 28 6.6
02_02_0666 - 12757555-12757688,12757968-12758029,12758156-127582... 28 6.6
01_06_0964 + 33446750-33447868 28 6.6
08_02_0825 - 21570628-21570715,21571436-21571812,21572364-215727... 28 8.7
07_01_0344 - 2490700-2493249 28 8.7
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 28 8.7
>04_04_0268 -
24050721-24050971,24051112-24051276,24051479-24051749,
24052344-24052517
Length = 286
Score = 205 bits (500), Expect = 3e-53
Identities = 100/179 (55%), Positives = 126/179 (70%), Gaps = 3/179 (1%)
Frame = +1
Query: 160 NVDLIRNLRTNGIIKSDTVANAMLAVDRKNYCPS--SPYQDSPQSIGFSATISAPHMHAH 333
N L+ L+ G +++D VA M ++DR + +PY DSP IG++ATISAPHMHA
Sbjct: 69 NKALVEYLKQYGAVRTDKVAEVMESIDRALFVAEGLTPYTDSPMPIGYNATISAPHMHAT 128
Query: 334 ALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDN 513
LE LK+ L PG ALDVGSGSGYLTAC AMM+G GR VGIEHI ELV +T+N+Q
Sbjct: 129 CLELLKDHLQPGMHALDVGSGSGYLTACFAMMVGPEGRAVGIEHIPELVAASTENVQRSA 188
Query: 514 PS-LLSSERIKLVVGDGRLGYPSEAPYSAIHVGAAAPTLPQALIDQLKPGGRLIVPVGA 687
+ LL + V DGRLG+P +APY AIHVGAAAP +PQ L+DQLK GGR+++PVG+
Sbjct: 189 AAQLLKDGSLSFHVADGRLGWPDDAPYDAIHVGAAAPEIPQPLVDQLKTGGRMVIPVGS 247
>08_02_1558 +
27870327-27870332,27870890-27871163,27871438-27871515,
27871753-27871917,27872353-27872603
Length = 257
Score = 176 bits (429), Expect = 1e-44
Identities = 100/212 (47%), Positives = 130/212 (61%), Gaps = 30/212 (14%)
Frame = +1
Query: 139 WRSHGAN-NVDLIRNLRTNGIIKSDTVANAMLAVDRKNYCP--SSPYQDSPQSIGFSATI 309
W S ++ N ++ L+ GIIKS VA M +DR + P +SPY DSP IG++ATI
Sbjct: 6 WSSGASDKNKAMVEQLQRYGIIKSSKVAQVMETIDRGLFVPPGASPYFDSPMPIGYNATI 65
Query: 310 SAPHMHAHALEKLKNQLVPGEKALDVGSG--------------------------SGYLT 411
SAPHMHA LE L+ L PG +ALDVGSG +GYLT
Sbjct: 66 SAPHMHASCLELLEKHLQPGMRALDVGSGFEMQKCLPTYVEKTIFSFISQLFREGTGYLT 125
Query: 412 ACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPS-LLSSERIKLVVGDGRLGYPSEAP 588
AC A+M+G GR VG+EHI ELV + +NI+ + L+ + + + DGR G+P AP
Sbjct: 126 ACFAIMVGPEGRAVGVEHIPELVTSSIENIKKSAAAPQLTDGSLSIHITDGREGWPELAP 185
Query: 589 YSAIHVGAAAPTLPQALIDQLKPGGRLIVPVG 684
Y AIHVGAAAP +PQALI+QLKPGGR+++PVG
Sbjct: 186 YDAIHVGAAAPQIPQALIEQLKPGGRMVIPVG 217
>08_01_0351 +
3095639-3095995,3096134-3096187,3096407-3096490,
3096972-3097097,3097174-3097241,3097324-3097393,
3097597-3097662,3098404-3098454
Length = 291
Score = 35.1 bits (77), Expect = 0.057
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Frame = +1
Query: 355 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQN-------DN 513
Q++ ++ ++VG +GY + +A+ L E+GR+V E + +A K Q D
Sbjct: 151 QILGAQRCIEVGVYTGYSSLAVALALPESGRLVACERDERCLEVAKKYYQRSGVAHKVDV 210
Query: 514 PSLLSSERIKLVVGDGRL 567
L+++ +KL++ G +
Sbjct: 211 KHALAADSLKLLIDGGEV 228
>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
Length = 326
Score = 34.7 bits (76), Expect = 0.076
Identities = 24/87 (27%), Positives = 43/87 (49%)
Frame = +1
Query: 355 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSE 534
+LVPG L+ G+GSG LT +A + GRV + + A ++ + ++ + + +
Sbjct: 120 ELVPGCLVLESGTGSGSLTTSLARAVAPHGRVCTFDFHDQRAASAREDFERNDLTSIITV 179
Query: 535 RIKLVVGDGRLGYPSEAPYSAIHVGAA 615
++ + G G+P E H GAA
Sbjct: 180 AVRDIQGQ---GFPEE------HTGAA 197
>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
Length = 327
Score = 34.3 bits (75), Expect = 0.100
Identities = 24/87 (27%), Positives = 42/87 (48%)
Frame = +1
Query: 355 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSE 534
+LVPG L+ G+GSG LT +A + GRV + + A ++ + + + + +
Sbjct: 120 ELVPGCLVLESGTGSGSLTTSLARAVAPHGRVCTFDFHDQRAASAREDFERNGLTSIITV 179
Query: 535 RIKLVVGDGRLGYPSEAPYSAIHVGAA 615
++ + G G+P E H GAA
Sbjct: 180 AVRDIQGQ---GFPEE------HTGAA 197
>12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193
Length = 353
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 382 DVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQ 504
D+G+GSG + +A MLG GRV + +++A N+Q
Sbjct: 183 DLGTGSGAIAVAVARMLGPEGRVFATDVSEVAIDVARLNVQ 223
>05_01_0268 -
2053420-2053539,2053636-2053710,2053805-2053867,
2053977-2054093,2054332-2054436,2054559-2054768,
2054858-2054983,2055061-2055114,2055198-2055278,
2055419-2055526,2055579-2055719,2056396-2056629
Length = 477
Score = 32.7 bits (71), Expect = 0.31
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 139 WRSHGANNVDLIRNLRTNGIIKSDTVANAMLAVDRKNYCPSSPYQDSPQSIGFSATISA 315
W SH A N+ L R L N + + D +K+Y P PY D + + F A + A
Sbjct: 259 WLSHSAQNL-LRRILEPNPMKRIDMAGIKSHEWFQKDYIPVLPYDDDDEDVQFGARLPA 316
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 2/111 (1%)
Frame = +1
Query: 256 PSSPYQDSPQSIGFSATISAPHMHAHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLG 435
PS+P + +P S S S P + K P L +G T C + +
Sbjct: 525 PSTP-RTNPLSTATSKIPSTPRTSLLSSSTSKIPSTPSTCELSTATGKIPSTTCTSPLST 583
Query: 436 ETGRVVGIEHISELVNLATKNIQNDNPSLLSSERIKL--VVGDGRLGYPSE 582
TG+ S L +K + S LSS IK+ G L P++
Sbjct: 584 ATGKTSSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTARTGELSTPTD 634
>06_01_0375 +
2699179-2699264,2699697-2699786,2699913-2699991,
2700816-2700893,2701290-2701338,2702183-2702232,
2702704-2702853,2703437-2703517,2703593-2703609,
2705804-2705893,2706033-2706111,2706234-2706311,
2707554-2707687,2707858-2707936,2708108-2708188,
2708263-2708400
Length = 452
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 367 GEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSE 534
G K +DVG G G L+ +A M G T V GI+ + + + +A + +D PS S E
Sbjct: 70 GLKVIDVGCGGGILSEPLARM-GAT--VTGIDAVDKNIKIARVHAASD-PSTASIE 121
>06_03_0021 +
15520342-15520443,15522217-15522867,15522980-15523186,
15523698-15523913,15523992-15524214,15525052-15525299,
15525385-15525563,15525803-15526056,15526237-15526388
Length = 743
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Frame = +1
Query: 187 TNGIIKSDTVANAMLAVDRKNYCPSSPYQDSPQSIGFSATISAPHMHAHALEK------- 345
+N I +++ V+ K YC + DS SI + + + P L+K
Sbjct: 421 SNTISPENSMVQTNQDVNTKEYCSTQRTSDS--SIIWRSPVDFPDARPETLQKTKSVLHK 478
Query: 346 LKNQLVPGEKALDVGSGSG 402
LK Q+V G + G+G+G
Sbjct: 479 LKQQIVEGTPVIGAGAGTG 497
>09_04_0540 -
18420517-18420822,18420903-18421037,18421118-18421262,
18421384-18421463,18421573-18421683
Length = 258
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 355 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIE 462
+L+ + A++VG +GY A+ L + G++V I+
Sbjct: 82 ELISAKNAIEVGVFTGYSLLATALALPDDGKIVAID 117
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 358 LVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATK 495
L+ G LDVG G+G L+ A RV+ ++ +++V++AT+
Sbjct: 289 LMNGATVLDVGCGTGILSLFAAK--AGASRVIAVDGSAKMVSVATE 332
>03_02_0990 -
13028011-13028114,13028182-13028554,13029488-13029631,
13030389-13030396,13030634-13030711,13030968-13031132,
13031414-13031471
Length = 309
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 517 LGCHFGCFWLPNSQVLIYVLSQLPGQFLLTSWP 419
+G H G +WL ++ +++ LP + L + WP
Sbjct: 221 VGSHDGAWWLASNMLILLWFVGLPIRVLASDWP 253
>02_02_0666 -
12757555-12757688,12757968-12758029,12758156-12758223,
12758359-12758490,12759116-12759351,12759451-12759648,
12760123-12760213,12760566-12760710,12760837-12760955
Length = 394
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = +1
Query: 364 PGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSERIK 543
PGE LD+ + G +A MLG G + G++ LA SL +R +
Sbjct: 107 PGEHVLDLCAAPGAKLCMLADMLGGRGSLTGVDVAKH--RLAACRTMLQKYSL--GDRCR 162
Query: 544 LVVGDG 561
L V DG
Sbjct: 163 LFVADG 168
>01_06_0964 + 33446750-33447868
Length = 372
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 226 MLAVDRKNYCPSSPYQDSPQSIGFSATISAPHMH 327
+L+ N C SSP S Q+I A +++PH H
Sbjct: 44 LLSPTATNLCASSPDPASCQAIVADAVLASPHSH 77
>08_02_0825 -
21570628-21570715,21571436-21571812,21572364-21572755,
21573943-21574311,21574395-21574580,21574709-21574845,
21575030-21575089,21575206-21575277,21575399-21575542,
21575702-21575773,21575928-21576060,21576157-21576247
Length = 706
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 355 QLVPGEKALDVGSGSGYLTACMAMML 432
+LV G++AL+VG GSG + +ML
Sbjct: 525 ELVTGQRALEVGKGSGVIQHQKGVML 550
>07_01_0344 - 2490700-2493249
Length = 849
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 628 VMWVLQPRHELHCKGLQMDNRDDHHQLQV*SSQMRVSLGC 509
V+W L+ +LH LQ N DD Q ++ S +LGC
Sbjct: 783 VLWHLESALQLHQGLLQSANTDDLSQPELKLSDASCNLGC 822
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 235 VDRKNYCPSSPYQDSPQSIGFSATISAPHMHAHALEKL--KNQLVPGEKALDVGSGSGYL 408
+ RK P++ + G +AT A + H + KL + Q + ++ GSG L
Sbjct: 122 IGRKKKAPAAKKDAAEGQEGEAATEEAKKSN-HVVRKLEKRQQTRTLDSHIEEQFGSGRL 180
Query: 409 TACMAMMLGETGRVVG 456
AC++ G+ GR G
Sbjct: 181 LACISSRPGQCGRADG 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,037,878
Number of Sequences: 37544
Number of extensions: 429065
Number of successful extensions: 1121
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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