Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j10
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   1.9  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   2.5  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    25   7.6  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   10.0 

>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 600 MYISYRLQGHYTTTRPN--HLFSTLELLHWMYEPNEYNEFWTLERKK 466
           M  S  +Q  +T  +P+     + L L H  Y   E NEFW LE +K
Sbjct: 247 MLCSNSVQSAHTNLQPDITSFVAILSLSHEAYHCTE-NEFWNLEAQK 292


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 584 DYKAIIRQHDQIICSQHWSYYTGC 513
           DY+  I   D++  + HWS +T C
Sbjct: 263 DYQIAIYMFDEMYRTHHWSSFTAC 286


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 431 IQHSILIKKCFSFFLSNVQNSLYSLGSYIQCSSSSVEN 544
           +Q++I +      F   V  SL+ +G + QC    VEN
Sbjct: 73  VQNNISLSAGCDIFQRFVTRSLHDVGDFEQCKRHLVEN 110


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 581 NRYDIYIYIYMFAFT 625
           N++ IYIYIY F ++
Sbjct: 75  NKFSIYIYIYFFFYS 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,947
Number of Sequences: 5004
Number of extensions: 58583
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)