Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j10
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42429| Best HMM Match : FAD_binding_8 (HMM E-Value=8.8e-06)         30   2.0  
SB_37733| Best HMM Match : 7tm_1 (HMM E-Value=0.21)                    28   7.9  
SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)                  28   7.9  
SB_45839| Best HMM Match : DUF1441 (HMM E-Value=0.82)                  28   7.9  
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           28   7.9  
SB_70| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   7.9  

>SB_42429| Best HMM Match : FAD_binding_8 (HMM E-Value=8.8e-06)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 587 IDYKAIIRQHDQIICSQH--WSYYTGCMNPTNIMNFG 483
           I Y++ + +HD  IC  H  W  +  CM P   + FG
Sbjct: 65  IRYQSNVDKHDPEICMNHTLWYNHPKCMEPPKFVPFG 101


>SB_37733| Best HMM Match : 7tm_1 (HMM E-Value=0.21)
          Length = 146

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 612 IYIYMYISYRLQGHYTTT 559
           ++IY+++SY  +GH TTT
Sbjct: 30  LFIYVFVSYYWRGHVTTT 47


>SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 688

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 582 LQGHYTTTRPNHLFSTLELLHWM-YEPNEYNE 490
           L+G+Y TT P  LF  L  L W+    N  NE
Sbjct: 47  LEGNYLTTLPETLFERLPNLKWLDLRNNHINE 78


>SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)
          Length = 1128

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 125  PYTTRYVGLCIFKKNLSKYENYRLLL*FFSHALTLFIAC*LQVWLGLGGIYVINL 289
            P +  + G CI+       E YR+++     +LT      L +WLG   ++V+ L
Sbjct: 900  PVSEMFHGACIWSIVAIAIERYRIIVHNTHPSLTATKLTILSIWLGAFALFVVPL 954


>SB_45839| Best HMM Match : DUF1441 (HMM E-Value=0.82)
          Length = 867

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 437 HSILIKKCFSFFLSNVQNSLYSLGSYIQCSSSSVENK 547
           H I I+   + F+ NV+ S   L  YI C     +NK
Sbjct: 827 HIICIQSALNMFIPNVKASYVVLVPYIYCQDLKSQNK 863


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -2

Query: 672  YKLQSIETFVAQIFTYVNAN----IYIYMYISYRLQGHYTTTRPNHLFSTLELLHWMYEP 505
            Y+   I T+V  +   VN      IY   YIS   +    T  P H+++T E+   M + 
Sbjct: 855  YRANKIYTYVGSVLVAVNPYCSFPIYGTAYISRYQKAVNATDLPPHIYATGEMSFAMMKR 914

Query: 504  NEYNE 490
             ++N+
Sbjct: 915  EKHNQ 919


>SB_70| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 612 IYIYMYISYRLQGHYTTT 559
           ++IY+++SY  +GH TTT
Sbjct: 79  LFIYVFVSYYWRGHVTTT 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,328,433
Number of Sequences: 59808
Number of extensions: 383712
Number of successful extensions: 716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)