Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j09
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31460.1 68417.m04470 ribosomal protein L28 family protein ri...    43   3e-04
At4g01800.1 68417.m00237 preprotein translocase secA subunit, pu...    31   1.1  
At3g02210.1 68416.m00202 phytochelatin synthetase family protein...    29   3.4  
At3g29810.1 68416.m03794 phytochelatin synthetase family protein...    29   4.5  
At5g26760.2 68418.m03189 expressed protein                             28   6.0  
At5g26760.1 68418.m03188 expressed protein                             28   6.0  
At2g33420.1 68415.m04096 expressed protein                             28   7.9  

>At4g31460.1 68417.m04470 ribosomal protein L28 family protein
           ribosomal protein YmL14 precursor, mitochondrial -
           Saccharomyces cerevisiae,PIR2:S50921
          Length = 212

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 22/86 (25%), Positives = 42/86 (48%)
 Frame = +1

Query: 229 GIWGGEAVVKGFQKRDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDHY 408
           G++ G  +  G +  +D   +    W P ++   + S + ++H+ V VT   +  I+   
Sbjct: 46  GLYAGRHIQYGNRVSEDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAG 105

Query: 409 GFDHYLLKTPACDLVSVLALKLKKQI 486
           G D YLLKTP   + + + L  K ++
Sbjct: 106 GIDEYLLKTPYQKMDTEMGLYWKTKV 131


>At4g01800.1 68417.m00237 preprotein translocase secA subunit,
            putative similar to preprotein translocase secA subunit,
            chloroplast [precursor] SP:Q9SYI0 from [Arabidopsis
            thaliana]; non-consensus GA donor splice site at exon 4
          Length = 1022

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/119 (21%), Positives = 56/119 (47%)
 Frame = +1

Query: 274  DDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDHYGFDHYLLKTPACDLV 453
            D+ +R+V +Y+  + K+     EVLN+      T+R  +L++D    +  +++     + 
Sbjct: 774  DEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSD--SLEPLIIEYAELTMD 831

Query: 454  SVLALKLKKQILTELMNGCPRHAYDPKKQMEIYEEYKTYLSSYTPEEIEWYGLTWYEAL 630
             +L   +            P+ ++D +K +   ++Y   L+  TP+ ++  G + YE L
Sbjct: 832  DILEANIGPD--------TPKESWDFEKLIAKVQQYCYLLNDLTPDLLKSEGSS-YEGL 881


>At3g02210.1 68416.m00202 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL3 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623);
           supported by cDNA: gi|26452134|dbj|AK118555.1; contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 452

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -2

Query: 360 EMSIENFRSYYSSLQYWHPVVRYPASSIITLLETFNHSFSSPYPLIDFSG 211
           +++I NF +Y  +   W+ VV++P    +T   +FN+   +PY  I+ +G
Sbjct: 312 KVTITNF-NYNMNYSQWNLVVQHPNFDNLTQTFSFNYKPLTPYASINDTG 360


>At3g29810.1 68416.m03794 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL2 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 441

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 360 EMSIENFRSYYSSLQYWHPVVRYPASSIITLLETFNHSFSSPY 232
           +++I NF +Y  +   W+ VV++P    +T L +FN+   +PY
Sbjct: 303 KVAITNF-NYNMNYSQWNLVVQHPNFDNLTKLFSFNYKPLNPY 344


>At5g26760.2 68418.m03189 expressed protein
          Length = 735

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 388 SLINDHYGFDHYLLKTPACDLVSVLALKLKKQILT 492
           ++++D YG ++ + K P C +   L+ KLK  + T
Sbjct: 312 AMMSDGYGVEYSVSKQPQCSMEDSLSCKLKGDLQT 346


>At5g26760.1 68418.m03188 expressed protein
          Length = 430

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 388 SLINDHYGFDHYLLKTPACDLVSVLALKLKKQILT 492
           ++++D YG ++ + K P C +   L+ KLK  + T
Sbjct: 7   AMMSDGYGVEYSVSKQPQCSMEDSLSCKLKGDLQT 41


>At2g33420.1 68415.m04096 expressed protein
          Length = 1039

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +2

Query: 170 KLIRYKIFLFLLNSPLKSMRGYGEEKL 250
           KL R  +++ LLNS L SM+G+ E++L
Sbjct: 405 KLDREALYVKLLNSTLASMQGWTEKRL 431


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,968,412
Number of Sequences: 28952
Number of extensions: 304917
Number of successful extensions: 970
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)