Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j07
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 83 3e-16
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 78 8e-15
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 73 2e-13
03_05_0830 + 28034179-28035492 29 3.8
08_02_0881 - 22216657-22216780,22216918-22217056,22217120-222171... 29 5.1
03_01_0409 - 3158939-3159040,3159301-3159464,3159950-3160044,316... 29 5.1
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327... 28 6.7
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 28 8.8
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 82.6 bits (195), Expect = 3e-16
Identities = 39/56 (69%), Positives = 46/56 (82%)
Frame = +3
Query: 138 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 305
MVAAKK KK+ ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLR
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLR 56
Score = 69.3 bits (162), Expect = 3e-12
Identities = 28/36 (77%), Positives = 33/36 (91%)
Frame = +2
Query: 629 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRV 736
RKSEIEYYA+LAK VHH+ GNN++LGTACGKY+RV
Sbjct: 56 RKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRV 91
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 77.8 bits (183), Expect = 8e-15
Identities = 38/70 (54%), Positives = 49/70 (70%)
Frame = +3
Query: 96 HCFILGFISIYAPKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLV 275
H F+ F+ + + V A QKK+ ++IN++L LVMKSGKY LGYK LKTLR K KL+
Sbjct: 29 HHFVAMFLLV-SDWWVVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLI 87
Query: 276 IIAKNAPPLR 305
I+A N PPLR
Sbjct: 88 ILANNCPPLR 97
Score = 70.1 bits (164), Expect = 2e-12
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = +2
Query: 629 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRV 736
RKSEIEYYA+L K VHH+ GNN++LGTACGKYYRV
Sbjct: 97 RKSEIEYYAMLGKVSVHHFHGNNVDLGTACGKYYRV 132
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 72.9 bits (171), Expect = 2e-13
Identities = 34/49 (69%), Positives = 37/49 (75%)
Frame = +3
Query: 159 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 305
KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PPLR
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLR 174
Score = 68.5 bits (160), Expect = 5e-12
Identities = 27/36 (75%), Positives = 33/36 (91%)
Frame = +2
Query: 629 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRV 736
RKSEIEYYA+L K V+H++GNN++LGTACGKYYRV
Sbjct: 174 RKSEIEYYAMLGKVSVYHFNGNNVDLGTACGKYYRV 209
>03_05_0830 + 28034179-28035492
Length = 437
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 207 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 290
+GKY G TLKTL G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>08_02_0881 -
22216657-22216780,22216918-22217056,22217120-22217192,
22218260-22218357,22218516-22218542,22218625-22218715,
22218819-22218900,22219983-22220098
Length = 249
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 587 EPME*SLNSILHFGRKSEIEYYALLAKTGVHHYSGNNI 700
E M+ L +LH S+++YY G+H+ NN+
Sbjct: 119 EYMDHDLKKVLHHSTPSQVKYYMEQLLKGLHYCHVNNV 156
>03_01_0409 -
3158939-3159040,3159301-3159464,3159950-3160044,
3160731-3161206
Length = 278
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 73 ILTEVIKYIVLF*DSLAFTLPKWLQQRNRKR-PSSQLTPA 189
+LT+V+ Y V SL T+ + LQQ+ ++R S+Q TPA
Sbjct: 173 VLTQVVNYPVNEVSSLERTMLRSLQQQQKQRWSSNQQTPA 212
>01_05_0712 -
24531654-24531874,24532438-24532538,24532621-24532716,
24532951-24533048,24533827-24533883,24534764-24534895,
24535042-24535155,24535227-24535359,24535448-24535678,
24535761-24535843,24536009-24536137,24536504-24536599,
24536719-24536773,24537316-24537386,24537472-24537525,
24537691-24537768,24537985-24538117,24539381-24539496,
24539580-24539651,24540113-24540218,24540657-24540772,
24541170-24541319,24541410-24541492,24541591-24541669,
24542645-24542695
Length = 884
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 525 IINSIKLHSFLNTVLLDHNVGNLWSSL*TRYF 620
I++ I +H L T+ D +V N W + YF
Sbjct: 790 ILDCIDVHKLLETIFGDQDVANSWKARCAEYF 821
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.9 bits (59), Expect = 8.8
Identities = 29/94 (30%), Positives = 45/94 (47%)
Frame = +3
Query: 15 SPNFILFLIALTALNKSFYNTYRGY*IHCFILGFISIYAPKMVAAKKQKKTIESINSRLA 194
S ++I+ ++ + N S G IH IL I Y+ V++ Q +ES+ + L
Sbjct: 1296 STSWIIDILEIVC-NSSLQAVKFGSKIHVKILK-IRCYS---VSSSLQFSGLESMET-LK 1349
Query: 195 LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 296
V SG Y LG+KQ L+T +G I+ P
Sbjct: 1350 EVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,991,355
Number of Sequences: 37544
Number of extensions: 329977
Number of successful extensions: 593
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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