Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11j03
(554 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061 97 1e-20
02_05_0964 - 33133516-33133689,33133780-33133857,33133997-331341... 77 1e-14
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845... 75 4e-14
06_01_0676 + 4945361-4945531,4945632-4945811,4947145-4947300,494... 75 4e-14
03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413 58 4e-09
10_08_0968 + 21933627-21933785,21933893-21933943,21934094-219341... 41 8e-04
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510... 29 2.5
12_01_0321 + 2447726-2447790,2448114-2448320,2449259-2449392,244... 29 3.3
06_01_0922 - 7113781-7113942,7114093-7114235,7115305-7115506,711... 28 4.4
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 28 4.4
03_03_0251 - 15849211-15851457 28 5.8
05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217 27 7.6
>07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061
Length = 98
Score = 96.7 bits (230), Expect = 1e-20
Identities = 50/96 (52%), Positives = 69/96 (71%)
Frame = +1
Query: 94 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVS 273
+RL+P L+RVL+++ K+AGGI++PE ++ ++ G+VVAVGPG R ++G IPV +
Sbjct: 3 RRLIPSLNRVLVEKLVQPKKSAGGILLPETSK-QLNSGKVVAVGPGERDKDGKLIPVALK 61
Query: 274 VGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 381
GD VLLPEYGG +V L EKEY LFRE DIL +
Sbjct: 62 EGDTVLLPEYGGLEVKLA-AEKEYLLFREHDILGTL 96
>02_05_0964 -
33133516-33133689,33133780-33133857,33133997-33134152,
33134685-33134864,33135516-33135695
Length = 255
Score = 76.6 bits (180), Expect = 1e-14
Identities = 43/94 (45%), Positives = 56/94 (59%)
Frame = +1
Query: 94 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVS 273
K + PL DRVLIK AEA KT GG+++ E + K G VVAVGPG E G IP+ VS
Sbjct: 160 KDMKPLSDRVLIKVAEAEDKTPGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLSVS 219
Query: 274 VGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 375
G VL +Y G++ +D Y + R SD++A
Sbjct: 220 AGSTVLYSKYAGSEFK-GSDGTSYIVLRVSDLMA 252
Score = 73.3 bits (172), Expect = 1e-13
Identities = 40/95 (42%), Positives = 58/95 (61%)
Frame = +1
Query: 100 LVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVSVG 279
L PL DRVL+K A KT GGI++P AQSK GEVVA+G G R + + V + VG
Sbjct: 64 LKPLADRVLVKIKSAEQKTTGGILLPSAAQSKPQGGEVVAIGEG-RTVGDNKVEVSIQVG 122
Query: 280 DKVLLPEYGGTKVSLENDEKEYHLFRESDILAKIE 384
+V+ +Y GT+V L ++ + + +E DI+ +E
Sbjct: 123 SQVVYSKYAGTEVEL--NDSNHLILKEDDIIGILE 155
>09_04_0259 -
16182190-16182360,16183185-16183262,16184431-16184586,
16184913-16185092,16185875-16186027
Length = 245
Score = 74.9 bits (176), Expect = 4e-14
Identities = 40/95 (42%), Positives = 60/95 (63%)
Frame = +1
Query: 91 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQV 270
VK L PL DRVLIK AEA KTAGG+++ + + K G V AVGPG E+G P+ +
Sbjct: 150 VKDLKPLNDRVLIKVAEAEEKTAGGLLLTQATKEKPSIGTVTAVGPGPLVEDGSRKPLSI 209
Query: 271 SVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 375
+ G+ V+ +Y G++ + ++ EY + R SD++A
Sbjct: 210 TPGNTVMYSKYAGSE--FKGEDGEYIVLRVSDVMA 242
Score = 69.7 bits (163), Expect = 1e-12
Identities = 45/116 (38%), Positives = 66/116 (56%)
Frame = +1
Query: 106 PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVSVGDK 285
PL DRVL+K + KT GGI++P QSK G+VVAVG G R D I + V VG +
Sbjct: 57 PLGDRVLVKIKTSDDKTVGGILLPTSVQSKPQGGQVVAVGEG-RSMGSDSIEISVPVGAQ 115
Query: 286 VLLPEYGGTKVSLENDEKEYHLFRESDILAKIEN*MMVALTCDSNSVSLVVACANE 453
V+ +Y GT+ LE D ++ + +E DI+ ++ + L ++ V + VA A E
Sbjct: 116 VVYSKYAGTE--LEFDGSDHLILKEDDIIGILDTDDVKDLKPLNDRVLIKVAEAEE 169
>06_01_0676 +
4945361-4945531,4945632-4945811,4947145-4947300,
4947460-4947537,4964041-4964214
Length = 252
Score = 74.9 bits (176), Expect = 4e-14
Identities = 42/95 (44%), Positives = 56/95 (58%)
Frame = +1
Query: 91 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQV 270
VK + PL DRVLIK AEA KTAGG+++ E + K G VVAVGPG + G P+ V
Sbjct: 156 VKDMKPLNDRVLIKVAEAEDKTAGGLILTETTKEKPSIGTVVAVGPGPLDDEGKRQPLSV 215
Query: 271 SVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 375
S G V+ +Y G++ D Y + R SD++A
Sbjct: 216 SAGSTVMYSKYAGSEFK-GADGTNYIVLRVSDVMA 249
Score = 70.1 bits (164), Expect = 1e-12
Identities = 42/95 (44%), Positives = 57/95 (60%)
Frame = +1
Query: 100 LVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVSVG 279
L PL DRVL+K A KT GGI++P AQSK GEVVAVG G R + V + +G
Sbjct: 61 LKPLGDRVLVKLGAAEEKTVGGILLPSTAQSKPQGGEVVAVGEG-RTIGDKKVEVSLQIG 119
Query: 280 DKVLLPEYGGTKVSLENDEKEYHLFRESDILAKIE 384
+V+ +Y GT+V ND K + + +E DI+ +E
Sbjct: 120 AEVVYSKYAGTEVQF-NDTK-HLILKEDDIIGVLE 152
>03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413
Length = 126
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/46 (63%), Positives = 33/46 (71%)
Frame = +1
Query: 208 EVVAVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEY 345
+VVAVGPG R +G IPV + GD VLLPEYGGT+V L EKEY
Sbjct: 79 KVVAVGPGERDRDGKLIPVSLKEGDTVLLPEYGGTEVKLA--EKEY 122
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +1
Query: 88 AVKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQ 267
A +RL+P ++RVL+++ K+AGGI++PE + V N +P +
Sbjct: 2 AARRLIPSMNRVLVEKLLQPNKSAGGILLPETTKQSFEDRNVFLFRITRNDGNNSPVPYK 61
Query: 268 VSVGDKVLLP 297
+ V LP
Sbjct: 62 IENKKPVSLP 71
>10_08_0968 +
21933627-21933785,21933893-21933943,21934094-21934129,
21935011-21935076,21935163-21935210,21936424-21936453,
21936651-21936719
Length = 152
Score = 40.7 bits (91), Expect = 8e-04
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +1
Query: 151 KTAGGIVIPEKAQS--KVLHGEVVAVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSL 324
K+ GG+++P+ A + L GE+++VG +V G KVL + +V L
Sbjct: 83 KSVGGVLLPKSAVKFERYLMGEILSVGADVN---------EVEAGKKVLFSDINAYEVDL 133
Query: 325 ENDEKEYHLF-RESDILAKIE 384
DEK H F RESD+LA +E
Sbjct: 134 GTDEK--HCFCRESDLLAVVE 152
>12_01_0618 -
5099021-5099668,5099701-5100221,5100311-5100352,
5100905-5100962
Length = 422
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 69 KNRNGQCSKTIGSSSGPCP 125
K++N +C KT+ SSSGPCP
Sbjct: 236 KDKN-ECLKTMRSSSGPCP 253
>12_01_0321 +
2447726-2447790,2448114-2448320,2449259-2449392,
2449481-2449668,2450204-2450359
Length = 249
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 323 RLTLVPPYSGRRTLSPTLT*TGMKSPFSFRAPGPT 219
R +V PY+ RR++ P + +G+K P + PT
Sbjct: 91 RFLIVSPYAARRSIMPKIKTSGVKYPDGWELIEPT 125
>06_01_0922 -
7113781-7113942,7114093-7114235,7115305-7115506,
7115590-7115685,7117053-7117139,7117237-7117638
Length = 363
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 199 LHGEVVAVGPGARKENGDF-IPVQVSVGDKVLLP 297
+HGEVV V PG + D+ V V VG ++++P
Sbjct: 78 VHGEVVQVTPGGEEHCYDYDYDVDVPVGAELVMP 111
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 28.3 bits (60), Expect = 4.4
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = -1
Query: 317 TLVPPYSGRRTLSPTLT*TGMKSPFSFR---APGPTATT--SPCKTLD*AFSGMTMPPAV 153
T PP + + SP G SP S AP P +TT SP + SG+T P V
Sbjct: 22 TAAPPPASNNSSSPPAP--GSLSPPSLTPPAAPSPPSTTPSSPAAAAAASSSGLTTPVVV 79
Query: 152 LVIASALLI 126
++ L++
Sbjct: 80 GIVVGGLVV 88
>03_03_0251 - 15849211-15851457
Length = 748
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +1
Query: 118 RVLIKRAEAITKTAGGIVIPEKAQSKVLH-GEVVAVGPGARKENGDFIPVQVSVGDKVLL 294
R L++R + + KT G I K V + G + + P + + + + + +
Sbjct: 600 RSLVRR-QNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYV 658
Query: 295 PEYGGTKVSLENDEKEYHLFRESDILA 375
P+Y +E DEKE L S+ LA
Sbjct: 659 PDYSFVLQDVEEDEKEQILNNHSERLA 685
>05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217
Length = 443
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 292 LPEYGGTKVSLENDEKEYHLFRESDILA 375
+P+ LE +EKE+HLF S+ LA
Sbjct: 393 VPDTSSVMHDLEENEKEHHLFLHSERLA 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,130,184
Number of Sequences: 37544
Number of extensions: 232795
Number of successful extensions: 681
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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