Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j03
         (554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to ...   106   1e-23
At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to ...   100   7e-22
At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21) ...    77   1e-14
At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21) ...    77   1e-14
At2g44650.1 68415.m05557 chloroplast chaperonin 10 (cpn10) ident...    49   2e-06
At3g60210.1 68416.m06728 chloroplast chaperonin 10, putative sim...    47   1e-05
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    29   1.6  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    29   2.1  
At5g53010.1 68418.m06584 calcium-transporting ATPase, putative         27   8.4  
At1g63410.1 68414.m07171 expressed protein contains Pfam profile...    27   8.4  

>At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to
           SP:P34893 from [Arabidopsis thaliana]
          Length = 98

 Score =  106 bits (254), Expect = 1e-23
 Identities = 51/97 (52%), Positives = 70/97 (72%)
 Frame = +1

Query: 91  VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQV 270
           +KRL+P  +R+L++R     KT  GI++PEK+ SK+  G+V+AVGPG+R ++G  IPV V
Sbjct: 2   MKRLIPTFNRILVQRVIQPAKTESGILLPEKS-SKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 271 SVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 381
             GD VLLPEYGGT+V L   E EYHLFR+ D+L  +
Sbjct: 61  KEGDTVLLPEYGGTQVKL--GENEYHLFRDEDVLGTL 95


>At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to 10
           kDa chaperonin SP:P34893 from [Arabidopsis thaliana]
          Length = 97

 Score =  100 bits (239), Expect = 7e-22
 Identities = 50/96 (52%), Positives = 70/96 (72%)
 Frame = +1

Query: 94  KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVS 273
           KRL+P L+RVL+++    +KT  GI++PEK+ S++  G V+AVGPGAR   G+ IPV V 
Sbjct: 3   KRLIPTLNRVLVEKILPPSKTVSGILLPEKS-SQLNSGRVIAVGPGARDRAGNLIPVSVK 61

Query: 274 VGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 381
            GD VLLPE+GGT+V L   EKE+ L+R+ DI+A +
Sbjct: 62  EGDNVLLPEFGGTQVKL--GEKEFLLYRDEDIMATL 95


>At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21)
           (CHCPN10) (CPN20) identical to chloroplast 20 kDa
           chaperonin, chloroplast precursor (Protein Cpn21),
           chloroplast protein Cpn10, chloroplast chaperonin 10
           (Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
           identical to cDNA chaperonin 20 GI:14587372
          Length = 253

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 42/95 (44%), Positives = 53/95 (55%)
 Frame = +1

Query: 91  VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQV 270
           +K L PL DRV IK AEA  KTAGG+++ E  + K   G V+AVGPG+  E G   P+ V
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPV 216

Query: 271 SVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 375
           S G  VL  +Y G       D   Y   R SD++A
Sbjct: 217 STGSTVLYSKYAGNDFK-GKDGSNYIALRASDVMA 250



 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 48/116 (41%), Positives = 67/116 (57%)
 Frame = +1

Query: 106 PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVSVGDK 285
           PL DRVL+K  EA  KT GGI++P  AQSK   GEVVAVG G R    + I + V  G +
Sbjct: 64  PLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEG-RTIGKNKIDITVPTGAQ 122

Query: 286 VLLPEYGGTKVSLENDEKEYHLFRESDILAKIEN*MMVALTCDSNSVSLVVACANE 453
           ++  +Y GT+V   ND K + + +E DI+  +E   +  L   ++ V + VA A E
Sbjct: 123 IIYSKYAGTEVEF-NDVK-HLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEE 176


>At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21)
           (CHCPN10) (CPN20) identical to chloroplast 20 kDa
           chaperonin, chloroplast precursor (Protein Cpn21),
           chloroplast protein Cpn10, chloroplast chaperonin 10
           (Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
           identical to cDNA chaperonin 20 GI:14587372
          Length = 253

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 42/95 (44%), Positives = 53/95 (55%)
 Frame = +1

Query: 91  VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQV 270
           +K L PL DRV IK AEA  KTAGG+++ E  + K   G V+AVGPG+  E G   P+ V
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPV 216

Query: 271 SVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 375
           S G  VL  +Y G       D   Y   R SD++A
Sbjct: 217 STGSTVLYSKYAGNDFK-GKDGSNYIALRASDVMA 250



 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 48/116 (41%), Positives = 67/116 (57%)
 Frame = +1

Query: 106 PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVSVGDK 285
           PL DRVL+K  EA  KT GGI++P  AQSK   GEVVAVG G R    + I + V  G +
Sbjct: 64  PLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEG-RTIGKNKIDITVPTGAQ 122

Query: 286 VLLPEYGGTKVSLENDEKEYHLFRESDILAKIEN*MMVALTCDSNSVSLVVACANE 453
           ++  +Y GT+V   ND K + + +E DI+  +E   +  L   ++ V + VA A E
Sbjct: 123 IIYSKYAGTEVEF-NDVK-HLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEE 176


>At2g44650.1 68415.m05557 chloroplast chaperonin 10 (cpn10)
           identical to chloroplast chaperonin 10 GI:14041813 from
           [Arabidopsis thaliana]
          Length = 139

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
 Frame = +1

Query: 97  RLVPLLDRVLIKRAEAITKTAGGIVIPEKAQ--SKVLHGEVVAVGPGARKENGDFIPVQV 270
           ++VP  DRVL++  +   K++GG+++P+ A    + L GE+++VG     E G     QV
Sbjct: 51  KVVPQADRVLVRLEDLPIKSSGGVLLPKAAVKFERYLTGEIISVG----SEVGQ----QV 102

Query: 271 SVGDKVLLPEYGGTKVSLENDEKEYHLF-RESDILAKIE 384
             G +VL  +    +V L  D +  H F +ESD+LA +E
Sbjct: 103 GPGKRVLFSDVSAYEVDLGTDAR--HCFCKESDLLALVE 139


>At3g60210.1 68416.m06728 chloroplast chaperonin 10, putative
           similar to chloroplast chaperonin 10 GI:14041813 from
           [Arabidopsis thaliana]
          Length = 138

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
 Frame = +1

Query: 97  RLVPLLDRVLIKRAEAITKTAGGIVIPEKAQ--SKVLHGEVVAVGPGARKENGDFIPVQV 270
           ++VP  DRVL++      K++GG+++P+ A    + L GEVV+VG     E G+  P   
Sbjct: 50  KVVPQADRVLVRLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSVG----SEVGEVEP--- 102

Query: 271 SVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKIE 384
             G KVL  +    +V    ++ ++   +ESD+LA ++
Sbjct: 103 --GKKVLFSDMSAYEVDFGTEDAKHCFCKESDLLAIVQ 138


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +3

Query: 72  NRNGQCSKTIGSSSGPCPDQKS*SYNQNCRRHCHPREGSIQGFTRRSSS---GRSWSPKR 242
           +R+   SKT   S     ++KS S +Q+      PR+  +    RRS S    RS SP+R
Sbjct: 215 SRSRSISKTNSGSKSYSGERKSRSTSQSSDASISPRKRRLSNSRRRSRSRSVRRSLSPRR 274

Query: 243 KWRLH 257
           + R+H
Sbjct: 275 R-RIH 278


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = -1

Query: 341 SFSSFSRLTLVPPYSGRRTLSPTLT*TGMKSPFSFRAPGPTATTSPCKTLD*AFSGMTMP 162
           SFS  ++     P +   T  P  T     +P +  AP PT TT P        S +T P
Sbjct: 19  SFSVNAQGPAASPVTSTTTAPPPTT----AAPPTTAAPPPTTTTPPVSAAQPPASPVTPP 74

Query: 161 PAV 153
           PAV
Sbjct: 75  PAV 77


>At5g53010.1 68418.m06584 calcium-transporting ATPase, putative 
          Length = 1049

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 109 LLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFI 258
           LL + L KR   +  T  GI  P+  +   +   +   G  A KEN DFI
Sbjct: 774 LLVQALKKRGHIVAATGMGIHDPKTLREADVSLAMGVGGTAAAKENSDFI 823


>At1g63410.1 68414.m07171 expressed protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567);
           expression supported by MPSS
          Length = 173

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 199 LHGEVVAVGPGARKENGDFIPVQVSVGDKVLL 294
           +HG ++A   G  K+  DF   +V+VGD++ +
Sbjct: 140 IHGNIIAQIDGEVKQLRDFEEEEVAVGDEIAI 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,025,889
Number of Sequences: 28952
Number of extensions: 196515
Number of successful extensions: 526
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)