Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11j01
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    28   1.5  
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |...    25   8.2  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   8.2  

>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = -1

Query: 644 SDTKVKSASSKFLSNPSKV*TVNNLSKTFRFSIFGLGNAMAMYRDLFFMNPTSRLEKXYV 465
           S+ K  +A     + PSKV  VN+LS       F   N  +MYR +   NP   ++  ++
Sbjct: 364 SERKAYAADDSIDNTPSKVPIVNSLSDPRTNRPFFYSNPDSMYRSI--SNPLHLVDSQHL 421

Query: 464 LTYSKQPSSGSP 429
              +++    +P
Sbjct: 422 SPLNRKTHFNNP 433


>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 18/83 (21%), Positives = 35/83 (42%)
 Frame = +3

Query: 165 PNYYDIGGTYYLEDLPDFWFTSKXEQVXDIFLLHIFIQRYCEGSFSISISHGSEMEIDKK 344
           P + D      + D  + +     E +  I  L   I++  +GS +    +    + D  
Sbjct: 15  PKFLDASVLRQIPDNQEVFLQDSKENLTVIIELLEKIEKPFDGSVAAYHFNSIAFDNDAS 74

Query: 345 QKIVRLTKSLKEYKFENTRRKQS 413
           Q+++   KSL E  FE  R +++
Sbjct: 75  QRVIWRDKSLGEDDFEGMRSEKA 97


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 550  LNLNVFDKLLTVHTFEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMF 714
            L L   +K++ VH F   +  +    F+ V +  EKF   K  LAA +   +++F
Sbjct: 996  LQLYPEEKIVQVHHFHKDIARIHGIPFSFVIKPQEKFIDTKLRLAARTQYPESIF 1050


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,822
Number of Sequences: 5004
Number of extensions: 66947
Number of successful extensions: 190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)