Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i22
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11509| Best HMM Match : Ycf9 (HMM E-Value=1.4)                      47   1e-05
SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)                    33   0.18 
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_42675| Best HMM Match : TFIIS_C (HMM E-Value=0.63)                  29   2.3  
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)                     29   3.0  
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_45783| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_6034| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)                    27   9.1  
SB_35016| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8)             27   9.1  
SB_20540| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-11)         27   9.1  

>SB_11509| Best HMM Match : Ycf9 (HMM E-Value=1.4)
          Length = 308

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
 Frame = +3

Query: 246 DLKLIVKHIPKLSKQPKHLVVLSDSDYHSIDDLARMVIWSLVAGIPFLSFYDVSGQLSYQ 425
           +LK I  H   L   P H+ ++      S  D+A++V+W +  GI ++S YD  G L   
Sbjct: 117 NLKEIHLHSKSLQTLPSHISLVILEQAISFSDVAKLVVWCMAMGIKYISVYDHKGILKGD 176

Query: 426 EEKLFNAVEKNKKGV----PGCIKWSKKPDLNGYTNGIPAHKIVVNIFSCQNGRSTITQC 593
             KL + +   +K V         +  +     + + +   ++ + + S ++G+  I + 
Sbjct: 177 TAKLSSEIIYKQKEVFAKEAKRYTFVLRNSRTKFDHTLAPTQVCITVLSAEDGKQDIVEA 236

Query: 594 IKEMC 608
            +E C
Sbjct: 237 AQEFC 241


>SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 438 FNAVEKNKKGVPGCIKWSKKPDLNGY-TNGIPAHKIVVNIFSCQNGRSTITQCIKE 602
           FN V  +   + GCI+W        Y  + +P H ++  ++   NG S+ T CI E
Sbjct: 3   FNGVSSSTMCITGCIQWRVIIYYVHYGMHSMPCHHLLCALWDAFNGVSSSTMCITE 58


>SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)
          Length = 331

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 438 FNAVEKNKKGVPGCIKWSKKPDLNGY-TNGIPAHKIVVNIFSCQNGRSTITQCIKE 602
           FN V  +   + GCI+W        Y  + +P H ++  ++   NG S+ T CI E
Sbjct: 3   FNGVSSSTMCITGCIQWRVIIYYVHYGMHSMPCHHLLCALWDAFNGVSSSTMCITE 58


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 492  KKPDLNGYTNGIPAHKIVVNIFSCQNGRSTITQCIKEMCE 611
            K   L GY     A   V ++F C    +T+T+ ++E C+
Sbjct: 1586 KDDSLCGYVMANGADSFVCHVFQCSPNAATLTKALREACQ 1625


>SB_42675| Best HMM Match : TFIIS_C (HMM E-Value=0.63)
          Length = 190

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = +3

Query: 165 FIVGAQNVYCRYWL----KKHSLQD--YEVTKTDLK 254
           +++GAQ V C YWL    KK ++QD  YE     LK
Sbjct: 151 WVIGAQQVGCTYWLSGLYKKETVQDMPYEENAAGLK 186


>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
          Length = 623

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 28/108 (25%), Positives = 51/108 (47%)
 Frame = +3

Query: 279 LSKQPKHLVVLSDSDYHSIDDLARMVIWSLVAGIPFLSFYDVSGQLSYQEEKLFNAVEKN 458
           LS    HLVV  +     +D++   ++ S       L  +D++ + S+ ++K    V   
Sbjct: 228 LSAFSNHLVVTHEEQ---MDEMVLDLVVSPGMSDHDLVLFDLNLKPSFNKKKP-RKVFVF 283

Query: 459 KKGVPGCIKWSKKPDLNGYTNGIPAHKIVVNIFSCQNGRSTITQCIKE 602
           KKG  G +K   K  L+ Y N    HK++   +     ++TIT+ +K+
Sbjct: 284 KKGNMGAVKTDLKKHLDNYFNNEAYHKLINENYDF--FKTTITEIMKK 329


>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = +3

Query: 387 LSFYDVSGQLSYQEEKLFNAVEKNKKGVPGCIKWSKKPDLNGYTNGIPAHKIVVNIFSCQ 566
           L  +D++ + S+ ++K    V   KKG  G +K   K  L+ Y N    HK++   +   
Sbjct: 655 LVLFDLNLKPSFNKKKP-RKVFVFKKGNMGAVKTDLKKHLDNYFNNEAYHKLINENYDF- 712

Query: 567 NGRSTITQCIKE 602
             ++TIT+ IK+
Sbjct: 713 -FKTTITEIIKK 723


>SB_45783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 31

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 403 YQVNFHIKKKNFLMQLRRTRKVFRGV 480
           Y + F IK+    +Q+R TR  FRGV
Sbjct: 5   YGLRFSIKRARVRIQIRSTRDFFRGV 30


>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 468 HLSCSSQLH*KVFLLDMKVDLIHHKNLKTVFRL 370
           H++   +LH ++FL+D  V L HH + K   RL
Sbjct: 63  HVAGEKRLHRELFLMDTSVKLGHHDSNKARKRL 95


>SB_6034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 31

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 403 YQVNFHIKKKNFLMQLRRTRKVFRGV 480
           Y + F IK+    +Q+R TR  FRGV
Sbjct: 5   YGLRFSIKRARVRIQIRSTRDFFRGV 30


>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
          Length = 598

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/72 (26%), Positives = 37/72 (51%)
 Frame = +3

Query: 387 LSFYDVSGQLSYQEEKLFNAVEKNKKGVPGCIKWSKKPDLNGYTNGIPAHKIVVNIFSCQ 566
           L  +D++ + S+ ++K    V   KKG  G +K   +  L+ Y N    HK++   +   
Sbjct: 341 LVLFDLNLKPSFNKKKP-RKVFVFKKGNMGAVKTDLRKHLDNYFNNEAYHKLITENYDF- 398

Query: 567 NGRSTITQCIKE 602
             ++TIT+ +K+
Sbjct: 399 -FKTTITEIMKK 409


>SB_35016| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8)
          Length = 412

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = +3

Query: 387 LSFYDVSGQLSYQEEKLFNAVEKNKKGVPGCIKWSKKPDLNGYTNGIPAHKIVVNIFSCQ 566
           L  +D++ + S+ ++K    V   KKG  G +K   K  L+ Y N    HK++   +   
Sbjct: 228 LVLFDLNLKPSFNKKKP-RKVFLFKKGNMGAVKTDLKKHLDNYFNNEAYHKLINENYDF- 285

Query: 567 NGRSTITQCIKE 602
             ++TIT+ +K+
Sbjct: 286 -FKTTITEIMKK 296


>SB_20540| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-11)
          Length = 301

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = +3

Query: 387 LSFYDVSGQLSYQEEKLFNAVEKNKKGVPGCIKWSKKPDLNGYTNGIPAHKIVVNIFSCQ 566
           L  +D++ + S+ ++K    V   KKG  G +K   K  L+ Y N    HK++   +   
Sbjct: 224 LVLFDLNLKPSFNKKKP-RKVFVFKKGNMGAVKTDLKKHLDNYFNNEAYHKLINENYDF- 281

Query: 567 NGRSTITQCIKE 602
             ++TIT+ +K+
Sbjct: 282 -FKTTITEIMKK 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,002,512
Number of Sequences: 59808
Number of extensions: 314007
Number of successful extensions: 738
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)