Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11i22
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024771-2|AAK70659.1| 697|Caenorhabditis elegans Hypothetical ... 30 1.5
Z81564-3|CAB04577.1| 536|Caenorhabditis elegans Hypothetical pr... 29 2.0
AL021386-2|CAA16165.1| 240|Caenorhabditis elegans Hypothetical ... 29 2.6
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 29 3.5
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 29 3.5
AF024494-9|AAB70333.1| 336|Caenorhabditis elegans Serpentine re... 28 4.6
Z77136-1|CAB00880.1| 606|Caenorhabditis elegans Hypothetical pr... 28 6.1
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 27 8.1
AC098856-8|ABO52819.1| 384|Caenorhabditis elegans Hypothetical ... 27 8.1
>AC024771-2|AAK70659.1| 697|Caenorhabditis elegans Hypothetical
protein Y40B10A.4 protein.
Length = 697
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 222 QDYEVTKTDLKLIVKHIPKLSKQPKHLVVLSDSD 323
Q E+ K DLKLI++H + +Q KH +V D+D
Sbjct: 85 QCLELVKEDLKLIMEHHNVVIEQFKHEIVDDDND 118
>Z81564-3|CAB04577.1| 536|Caenorhabditis elegans Hypothetical
protein K05C4.3 protein.
Length = 536
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Frame = -3
Query: 507 SNQVSLTILYTPEHLSCS-SQLH*KVFLL---DMKVDLIHHKNLK-TVFRLLNSIS 355
SNQ+ T+L LSC + + VF L D+K++LIHH+++K T L+S++
Sbjct: 36 SNQIFATLLNNRFLLSCELNDIKGLVFNLTDVDLKMNLIHHESMKMTKSHCLDSLA 91
>AL021386-2|CAA16165.1| 240|Caenorhabditis elegans Hypothetical
protein F57E7.2 protein.
Length = 240
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 198 YWLKKHSLQDYEVTKTDLKLIVKHIPKLSKQPKHLVVLSDSDYHSIDDLARMVIW 362
+W + ++ DY V K D ++ + K S KHL+ +S ++ +A + W
Sbjct: 43 FWYNRSAMSDYSVPKLDSEVQYLIVVKNSSLTKHLIRKLESYNWTLPAIATLDKW 97
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -3
Query: 477 TPEHLSCSSQLH*KVFLLDMKVDL----IHHKNLKTVFRLLNS 361
T EHLS + LH V+L+ K+D+ I + +K + RL+ S
Sbjct: 270 TKEHLSLALSLHVPVYLVVTKIDMCPAYILEETMKNITRLVRS 312
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -3
Query: 477 TPEHLSCSSQLH*KVFLLDMKVDL----IHHKNLKTVFRLLNS 361
T EHLS + LH V+L+ K+D+ I + +K + RL+ S
Sbjct: 269 TKEHLSLALSLHVPVYLVVTKIDMCPANILEETMKNITRLVRS 311
>AF024494-9|AAB70333.1| 336|Caenorhabditis elegans Serpentine
receptor, class u protein27 protein.
Length = 336
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 604 ISLIHCVIVERPF*QEKIFTTILCAGMPF--VYPFKSGFFDHFIHPGTPF 461
+S + V++ P QEKI IL + +PF +YP FF F+ P +
Sbjct: 133 VSTMRLVLIAYPQRQEKINRVILKSALPFILIYPM---FFTFFMWPAVGY 179
>Z77136-1|CAB00880.1| 606|Caenorhabditis elegans Hypothetical
protein ZC376.1 protein.
Length = 606
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +3
Query: 375 GIPFLSFYDVSGQLSYQEEKLFNAVE---KNKKGVPGCIKWSKKPDLNGYTNGIPAHKIV 545
GIP++ G+L +++ +L + E + K P C+ + +K NG+ I +
Sbjct: 49 GIPYVE--PPIGELRFRKPRLLKSWEGVLETKDYKPACMSYWRKTFKNGFVGEISEDCLY 106
Query: 546 VNIFSCQ 566
N+F+ Q
Sbjct: 107 ANVFTNQ 113
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 519 NGIPAHKIVVNIFSCQNGRSTITQC 593
NG+ A + SCQNGR I +C
Sbjct: 315 NGLYALDCTPRVLSCQNGRENIFEC 339
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -3
Query: 477 TPEHLSCSSQLH*KVFLLDMKVDLIHHKNLKTVFRLLNSI 358
T EHL + L+ +F+L K+DL+ + LK + + ++++
Sbjct: 292 TREHLGLIAALNIPMFVLITKMDLVDRQGLKKIIKDVSNL 331
>AC098856-8|ABO52819.1| 384|Caenorhabditis elegans Hypothetical
protein Y37F4.6 protein.
Length = 384
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -2
Query: 175 PTIKFKIKCSKANKNCRSNRDSIIHI--KLLSAT 80
PTI + +KC++ KNCR R +I + KL+ T
Sbjct: 247 PTILYCVKCNR--KNCRFQRTRLIELIPKLIQVT 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,017,104
Number of Sequences: 27780
Number of extensions: 257959
Number of successful extensions: 749
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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