Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i20
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05)                   56   2e-08
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)                44   8e-05
SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05)                   44   1e-04
SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               30   1.4  
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)                    29   2.5  
SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25)              29   2.5  
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       29   3.3  
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               28   5.7  
SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)                    28   5.7  
SB_55983| Best HMM Match : RhoGEF (HMM E-Value=0.0046)                 28   7.6  
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)               28   7.6  
SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07)                  28   7.6  
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05)
          Length = 314

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 1/164 (0%)
 Frame = +1

Query: 148 APAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQYYTLAMTDPDAPSRKEPTF 327
           +P   L ++Y SG +V  GN LTP+Q          +  G          D+ S      
Sbjct: 92  SPCVNLDIRYESGAKVHHGNFLTPSQ---------HSACGFGVDSLWILHDSEST----- 137

Query: 328 REWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKL-TFDEPRLTN 504
            ++ H  + NIQG+ V++G  L +Y+   PP+ TG HRY F L +Q  +L  +  P  T 
Sbjct: 138 -QFVHASLVNIQGSRVSNGTVLCEYLPPIPPQGTGFHRYTFCLLRQEQQLKPYTLP--TF 194

Query: 505 TSSDKRANFKIAEFAKKYNLGDPIAGNFYEAQYDDYVPILYKQL 636
            S   R+    A  +K  +   P+   F++A +DD V   ++ +
Sbjct: 195 RSLTDRSISTSALISKVQDRLTPVGLGFFQASWDDSVTQTFRDI 238


>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
          Length = 1049

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 21/54 (38%), Positives = 35/54 (64%)
 Frame = -1

Query: 480 CELRWLFVQEEHVSVQACLFRRSRAHVLGQSFAGVYLVALDVANQPVVPFAKCG 319
           C L  L V +++V+++A   R +RA+VL  S    Y+ A D+ ++PVVPF++ G
Sbjct: 332 CNLPLLLVHKKNVTMEASSLRWTRANVLSGSHPLAYITARDIDHKPVVPFSEFG 385


>SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05)
          Length = 115

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
 Frame = +1

Query: 292 DPDAPSRKEPTFREWHHWLVGNIQGNE------VNSG---------ETLSQYVGSGPPEK 426
           DPDAPS     +R W H+L  NI  +E      + SG           L  Y    PP  
Sbjct: 4   DPDAPSPIRHQYRSWLHYLKVNIPSDELAQRLDIQSGMDTIQSGMDTELKSYRPPSPPSG 63

Query: 427 TGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNL 564
           +GLHRY +   +Q  K+    P    +   +R +F   EFA K+NL
Sbjct: 64  SGLHRYKYYALEQTGKV---RP----SPISERRSFDAQEFAAKHNL 102


>SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = +1

Query: 388 TLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLG 567
           T+   + S  PE+  L   +    +Q S+L      +   S D+R   K+ E +  + +G
Sbjct: 726 TVDSSLTSSEPEERDLKAELAAWTRQTSQLPLPAEGIRTCSLDRRRGKKVFEMSSSHKIG 785

Query: 568 DPIAGNFYEAQYDDYVP 618
              AG+F   + DD  P
Sbjct: 786 RYSAGDFPVQEVDDNKP 802


>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 31/128 (24%), Positives = 52/128 (40%)
 Frame = +2

Query: 254 TRSQDSTTLWP*PTLMRRPVKNPHFANGTTGWLATSRATR*TPAKLCPSTWALDLRKRQA 433
           T+++  TT    P+    P+ +P      T   AT+  T    A    +  A      Q 
Sbjct: 380 TKAKPPTTT---PSKATAPISDPMTTTTPTTTKATTPTTTKATASTQTAAEANTFLSTQK 436

Query: 434 CTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GIRLRATSTKRSMTTT 613
              T S  T+   ++ S +  + T  +T+   +   SS  STT      +TST ++ TT 
Sbjct: 437 TDATTSQSTSTTEATKSQTTKATTTLSTSTTKATTTSST-STTKATTTLSTSTTKATTTP 495

Query: 614 SLFCTSSS 637
           S   T ++
Sbjct: 496 STSTTKAT 503


>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
          Length = 600

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -3

Query: 454 RGTRICAGLSFPEVQSPRTGTKFRRSLPRCPGCCQPASGAIREMWVLYGTAHQGRS 287
           +G  +   +S  EV+SP    +   ++P  PG   P+SGA+ +   LY   H G +
Sbjct: 539 QGDHLAGLVSAGEVRSPGCSPEDVLAVPASPGLVPPSSGALTD---LYQRLHAGEN 591


>SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25)
          Length = 526

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = -3

Query: 406 PRTGTKFRRSLPRCP-GCCQPASGAIREMWVLYGTAHQGRSWPECSTVLAPRPISLKARL 230
           PR   +  RS  +C   CC+      R    L  T H+GR  P   T    RP+ +K   
Sbjct: 173 PRRSLRPNRSRSQCSLECCEEEDMETRSKARLM-TPHEGRRTPRTRTSARTRPLGIKKEP 231

Query: 229 SPELESAHYLL 197
             +++    +L
Sbjct: 232 EDDVDHVKAML 242


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/100 (26%), Positives = 44/100 (44%)
 Frame = +1

Query: 190  EVKEGNELTPTQVKDEPSVKWDAEPGQYYTLAMTDPDAPSRKEPTFREWHHWLVGNIQGN 369
            E+ E  +   + +     +  + EP Q   +  +   AP+ KEP  RE      G+  G+
Sbjct: 788  ELGESGKSGESSISKRSKIPRENEPVQQTEIKKSTQPAPASKEPK-REGASGESGSGSGS 846

Query: 370  EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDE 489
             V+S  T       GP +KT   +    ++ QP+K T +E
Sbjct: 847  SVSSSITKRSL---GPLDKTDSGKVA--MFAQPAKETANE 881


>SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 26/98 (26%), Positives = 44/98 (44%)
 Frame = -1

Query: 537 NFEIGTFVARSVSESRLVECELRWLFVQEEHVSVQACLFRRSRAHVLGQSFAGVYLVALD 358
           N ++G  + +   E R    +L W  + +  ++VQ C  R+   HVL +       V LD
Sbjct: 92  NGDLGALIKKHKREKRYTAEDLVWKLLYQLVLAVQECHRRKDGGHVLHRDLKPAN-VFLD 150

Query: 357 VANQPVVPFAKCGFFTGRRIRVGHGQSVVLSWLRVPFH 244
            AN  V    K G F   R+ + H  S   +++  P++
Sbjct: 151 -ANMNV----KLGDFGLARV-LSHDTSFAKTFVGTPYY 182


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 103  KSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKW 252
            +SFE     P V  +AP+  L+++  + +E  +   +     K +P +KW
Sbjct: 2919 RSFEVDVTAPKVKGEAPSFSLELRPIAAIEEFDSKLICHVSGKPKPQIKW 2968


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
 Frame = +1

Query: 67  IRVLTRAMSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTQ--VKDEP 240
           I V +    T A    A  V   V PK P A++Q K       K GN L      ++   
Sbjct: 527 ITVDSEKQKTAATKASAPFVFTAVQPK-PEAVVQTKNCRSSVRKSGNWLDTISKSLQARK 585

Query: 241 SVKWDAEPGQYYTLAMTDPDAPSRKEPTFREWHHWL 348
             K   E  +        PDAP R++ + R+  +WL
Sbjct: 586 EAKCKEENFEGLREMFATPDAPQRQKKSTRKSGNWL 621


>SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 441

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 280 LAMTDPDAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVG 408
           L +   D P + E    E+ +  +GN+ GNEV S E L Q +G
Sbjct: 69  LVLEISDKPGKHEKGEPEFKY--IGNMHGNEVVSREILLQLIG 109


>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
          Length = 978

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
 Frame = +1

Query: 166 QVKYPSGVEVKEGNELTPTQVKDEPSVKWD------AEPGQY--YTLAMTDPDAPSRKEP 321
           Q+K   GV  K    L+ TQ+    SV+WD      A+PG    + + +TD +     + 
Sbjct: 123 QIKALPGVRAKP---LSSTQI----SVEWDSLQPLTADPGDLISHKIILTDKETGDVTQR 175

Query: 322 TFREWHHWL-VGNIQ 363
           T   W +WL V N+Q
Sbjct: 176 TTNSWTNWLVVSNLQ 190


>SB_55983| Best HMM Match : RhoGEF (HMM E-Value=0.0046)
          Length = 357

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
 Frame = +2

Query: 392 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRD----SLTLRATNVPISKLPSSPRST 559
           C S +     +   CT     CT+  R  H TSRD    S  LR T+  +       R T
Sbjct: 276 CTSRYVCCTSRDVRCTSRDVRCTSRDRDGHFTSRDVRCNSRDLRCTSRDLRCTSRDVRCT 335

Query: 560 T*GIRLRATSTKRSMTTTSLFCTSS 634
           +  +R     T   +  TS+ C  S
Sbjct: 336 SRDVR----CTLCDVRCTSVICAIS 356


>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
          Length = 398

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 376 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRAN 528
           NS  T SQ V S PP  +    ++  L K PS+ +F   R+  +++ ++ N
Sbjct: 294 NSRFTTSQAVQSPPPLPSSYREFMVQLQKLPSEGSFPPNRVAPSATMQQRN 344


>SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07)
          Length = 391

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -1

Query: 636 ELLVQNRDVVVILRFVEVARNRI 568
           ELLV ++DVV++L FV + + ++
Sbjct: 269 ELLVHHKDVVLVLPFVSIVQEKV 291


>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1296

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
 Frame = +2

Query: 317 NPHFANGTTGWLATSRATR*TPA-KLCPSTWALDLRKRQACT--DTCSSCTNNHRSSHST 487
           N +    T   ++TS  T  T +  L  ST  L   K +  T  DT ++ T    + H+T
Sbjct: 605 NTYTKTDTLTAISTSITTLVTTSIHLATSTQLLTSTKTETKTNTDTSTATTTTTHTHHTT 664

Query: 488 SRDSLTLRATNVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSLFCTSS 634
                T+R T V      SS   TT    + AT T+ ++ T++   T +
Sbjct: 665 ETQVSTVRTTTVDTL---SSTHVTT--ATITATKTQTTLATSTTVTTET 708


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,950,193
Number of Sequences: 59808
Number of extensions: 524072
Number of successful extensions: 1721
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1714
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)