Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i20
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical ...   252   2e-67
AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical ...   251   4e-67
AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical ...   112   2e-25
AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical ...    59   3e-09
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    43   2e-04
U39999-7|AAY44012.1|  232|Caenorhabditis elegans Hypothetical pr...    38   0.008
U39999-8|AAY44011.1|  146|Caenorhabditis elegans Hypothetical pr...    34   0.10 
U23177-2|AAA64331.2|  538|Caenorhabditis elegans Hypothetical pr...    31   0.54 
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    30   1.2  
AL132876-15|CAD21668.2|  722|Caenorhabditis elegans Hypothetical...    30   1.6  
AB096636-1|BAC76736.1|  722|Caenorhabditis elegans tyrosyl-tRNA ...    30   1.6  
AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine re...    29   2.2  
Z92829-7|CAB07347.1|  284|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81529-5|CAB04296.1|  288|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    28   5.0  
U41559-1|AAC24260.1|  373|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF038618-9|AAB92066.1|  304|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical
           protein F40A3.3a protein.
          Length = 221

 Score =  252 bits (617), Expect = 2e-67
 Identities = 114/190 (60%), Positives = 145/190 (76%), Gaps = 3/190 (1%)
 Frame = +1

Query: 82  RAMSTVA-KSFEASQVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWD 255
           R ++T+A ++F   +V+PDV+    P+ ++ VK+ SGVE   GN LTPTQVKD P VKWD
Sbjct: 32  RGLATMAAEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWD 91

Query: 256 AEPGQYYTLAMTDPDAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGL 435
           AEPG  YTL  TDPDAPSRKEPT+REWHHWLV NI GN++  G+TLS+Y+G+GPP KTGL
Sbjct: 92  AEPGALYTLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGL 151

Query: 436 HRYVFLLYKQPSKL-TFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYEAQYDDY 612
           HRYV+L+YKQ  ++   +  RLTNTS DKR  +K A+F  K+ LG P+ GN ++A+YDDY
Sbjct: 152 HRYVYLIYKQSGRIEDAEHGRLTNTSGDKRGGWKAADFVAKHKLGAPVFGNLFQAEYDDY 211

Query: 613 VPILYKQLGA 642
           VPIL KQLGA
Sbjct: 212 VPILNKQLGA 221


>AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical
           protein F40A3.3b protein.
          Length = 185

 Score =  251 bits (614), Expect = 4e-67
 Identities = 112/183 (61%), Positives = 140/183 (76%), Gaps = 2/183 (1%)
 Frame = +1

Query: 100 AKSFEASQVVPDVIPK-APAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQYY 276
           A++F   +V+PDV+    P+ ++ VK+ SGVE   GN LTPTQVKD P VKWDAEPG  Y
Sbjct: 3   AEAFTKHEVIPDVLASNPPSKVVSVKFNSGVEANLGNVLTPTQVKDTPEVKWDAEPGALY 62

Query: 277 TLAMTDPDAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGLHRYVFLL 456
           TL  TDPDAPSRKEPT+REWHHWLV NI GN++  G+TLS+Y+G+GPP KTGLHRYV+L+
Sbjct: 63  TLIKTDPDAPSRKEPTYREWHHWLVVNIPGNDIAKGDTLSEYIGAGPPPKTGLHRYVYLI 122

Query: 457 YKQPSKL-TFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYEAQYDDYVPILYKQ 633
           YKQ  ++   +  RLTNTS DKR  +K A+F  K+ LG P+ GN ++A+YDDYVPIL KQ
Sbjct: 123 YKQSGRIEDAEHGRLTNTSGDKRGGWKAADFVAKHKLGAPVFGNLFQAEYDDYVPILNKQ 182

Query: 634 LGA 642
           LGA
Sbjct: 183 LGA 185


>AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical
           protein Y69E1A.5 protein.
          Length = 172

 Score =  112 bits (269), Expect = 2e-25
 Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 7/180 (3%)
 Frame = +1

Query: 88  MSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKW---DA 258
           MS ++ +F   ++ P +I  AP   L + +  G++V+ G  +    +K+ P  +W    A
Sbjct: 1   MSDISAAFAQHEITPKIIENAPKQKLHLCW-DGIQVEPGMTMQVRNLKNAP--RWALPGA 57

Query: 259 EPGQYYTLAMTDPDAPSRKEPTFREWHHWLVGNIQGNE----VNSGETLSQYVGSGPPEK 426
           +P   YT+ M DPD  SRK P+  EW HWLV NI  +     +N G+    Y    P  +
Sbjct: 58  DPESIYTVLMIDPDNLSRKNPSVAEWLHWLVCNIPASNIIDGINGGQHQMAYGSPAPGPR 117

Query: 427 TGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYEAQYD 606
           T LHRYV L+++   +      R++      RA F + +F +K  LGDPIAGNF+ AQ++
Sbjct: 118 TDLHRYVILMWEHAGR------RISVPKPSSRAKFNVKQFIEKNKLGDPIAGNFFLAQHE 171


>AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical
           protein Y34D9A.1 protein.
          Length = 413

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
 Frame = +1

Query: 163 LQVKYPSGVEVKEGNELTPTQVKDEPSVKWDA--EPGQYYTLAMTDPDAPSRKEPTFREW 336
           LQV + + + V  GN +T       P +  ++    G + TL M + D  +       E 
Sbjct: 157 LQVNFENDIVVHSGNVITANSTLKRPEITIESVGNGGGFNTLLMINLDGNALDLGKNGEI 216

Query: 337 HHWLVGNI-QGNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSS 513
             W++ NI  G  +++G  +  Y+   P   TG HR  F+L++    + F   ++   S 
Sbjct: 217 VQWMISNIPDGEAISAGSEIIDYLQPLPFYGTGYHRVAFVLFRHEKPVDF---QIQGNSL 273

Query: 514 DKRANFKIAEFAKKYNLG-DPIAGNFYEAQYDDYVPILYKQLG 639
           D R + +I++F KK+     P A  F++  YD+ V +    LG
Sbjct: 274 DTRIH-EISKFYKKHEATITPSAIRFFQTSYDNSVKMALHGLG 315


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 26/81 (32%), Positives = 40/81 (49%)
 Frame = +2

Query: 392 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GI 571
           C ST+    +K Q C  TCS C+++  SS S+S  S +  ++    S   SS  S++   
Sbjct: 18  CTSTFYTTAQKTQYCASTCSLCSDSSDSSSSSSTASTSSSSSTAATSSDDSSSSSSSSSS 77

Query: 572 RLRATSTKRSMTTTSLFCTSS 634
              +TS+  + T  S   TSS
Sbjct: 78  SASSTSSSDTTTADSSSTTSS 98



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 392 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATN 520
           C S++     K Q C  TCS C+++  SS S+S  S +   T+
Sbjct: 147 CTSSFYTTAIKTQYCAATCSLCSSSSDSSSSSSTASTSSSCTD 189


>U39999-7|AAY44012.1|  232|Caenorhabditis elegans Hypothetical
           protein F41G3.20 protein.
          Length = 232

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 26/85 (30%), Positives = 39/85 (45%)
 Frame = +2

Query: 383 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT 562
           A  C ++  L L K+Q C  TC  CT++  ++ S+S   + L   +  +S  P      T
Sbjct: 101 ASYCANSAYLTLMKQQ-CPKTCGYCTSSSATTTSSSSTCIDLTNASTGVSDCPGMASYCT 159

Query: 563 *GIRLRATSTKRSMTTTSLFCTSSS 637
               L  T  K+    T  +CTSSS
Sbjct: 160 NSAYL--TLMKQQCPKTCGYCTSSS 182



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 383 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTS 490
           A  C ++  L L K+Q C  TC  CT++  SS S+S
Sbjct: 155 ASYCTNSAYLTLMKQQ-CPKTCGYCTSSSSSSSSSS 189


>U39999-8|AAY44011.1|  146|Caenorhabditis elegans Hypothetical
           protein F41G3.19 protein.
          Length = 146

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = +2

Query: 383 AKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT 562
           A  C ++  L L K Q C  TC  CT++  +S +TS  S  +  TN        +  ++ 
Sbjct: 64  ASYCTNSVYLTLMKTQ-CPKTCGYCTSSSSTSSTTSSSSTCVDLTNASTGVSDCTRMASY 122

Query: 563 *GIRLRATSTKRSMTTTSLFCTS 631
               +  T  K+    T  +CTS
Sbjct: 123 CTNSIYLTLMKQQCPKTCGYCTS 145


>U23177-2|AAA64331.2|  538|Caenorhabditis elegans Hypothetical
           protein C56G2.4 protein.
          Length = 538

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +1

Query: 340 HWLVGNIQGNEVNS----GETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNT 507
           HWL  +I    +N+    G T + YV   P + +  H Y+F+L  QP+ +   E      
Sbjct: 375 HWLEVDIPAANLNAANGNGLTKADYVPLIPKKPSTCHSYLFVLLAQPASMQTLE-SYCEG 433

Query: 508 SSDKRANFKIAEFAKKYNL 564
             + R  F++  F +++ L
Sbjct: 434 MCETRKKFRLELFKQQHGL 452


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 437 CRPVFSGG-PEPTYWDKVSPEFTSLPWMLPTSQWCHSRNVGSLRDG--ASGSVMA 282
           CRP  SGG P PTY D  S      P    T+Q    + VG++ +G   +G  MA
Sbjct: 18  CRPHTSGGAPNPTYSD-ASTTLLKYPLAAGTNQNRRRQQVGTMNNGDPVAGGPMA 71


>AL132876-15|CAD21668.2|  722|Caenorhabditis elegans Hypothetical
           protein Y105E8A.19 protein.
          Length = 722

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +1

Query: 205 NELTPTQVKDEPSVKWDA-EPGQYYTLAMTDPDAPSRKEPTF----REWHHWLVGNIQGN 369
           N L   +V+ +  V  DA E G  ++   T+P  P  + P       E   W    + GN
Sbjct: 324 NLLEKVRVRCDTDVVRDAKEKGYNHSTDSTEPAIPPSEAPKIPSLSSEQKQWKDQLLNGN 383

Query: 370 EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTF 483
           E+  GE L + +    P+K  LH    L++  P K  F
Sbjct: 384 EILIGEELDRVLADVSPQKP-LH----LMFIAPGKGRF 416


>AB096636-1|BAC76736.1|  722|Caenorhabditis elegans tyrosyl-tRNA
           synthetase (cytoplasmic)protein.
          Length = 722

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +1

Query: 205 NELTPTQVKDEPSVKWDA-EPGQYYTLAMTDPDAPSRKEPTF----REWHHWLVGNIQGN 369
           N L   +V+ +  V  DA E G  ++   T+P  P  + P       E   W    + GN
Sbjct: 324 NLLEKVRVRCDTDVVRDAKEKGYNHSTDSTEPAIPPSEAPKIPSLSSEQKQWKDQLLNGN 383

Query: 370 EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTF 483
           E+  GE L + +    P+K  LH    L++  P K  F
Sbjct: 384 EILIGEELDRVLADVSPQKP-LH----LMFIAPGKGRF 416


>AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine
           receptor, class sx protein7 protein.
          Length = 274

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 466 VVCTRGTRICAGLSFPEVQSPRT 398
           ++C  GT +  GL+FP++Q  RT
Sbjct: 58  IICLLGTMVDVGLAFPDIQLDRT 80


>Z92829-7|CAB07347.1|  284|Caenorhabditis elegans Hypothetical
           protein F10A3.11 protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 589 RSCPQSDPLGCTSWRTRQF 533
           +SCP  D  GCT+W+   F
Sbjct: 251 KSCPSVDSYGCTNWKNYDF 269


>Z81529-5|CAB04296.1|  288|Caenorhabditis elegans Hypothetical
           protein F35E8.7 protein.
          Length = 288

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 434 CTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRS-TT*GIRLRATSTKRSMTT 610
           C  TC  CT+   ++ ST+  +         +    ++P + TT       T    + TT
Sbjct: 183 CRKTCKRCTSGPTATTSTAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAAATT 242

Query: 611 TSLFCTS 631
           T+  CTS
Sbjct: 243 TAAACTS 249


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 25/93 (26%), Positives = 37/93 (39%)
 Frame = +2

Query: 338 TTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRAT 517
           TT   +T  +T   P      T A+        T T    T+   +S +++  S T   T
Sbjct: 283 TTTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSST-STT 341

Query: 518 NVPISKLPSSPRSTT*GIRLRATSTKRSMTTTS 616
               S + SSP STT    +  T+T    +T S
Sbjct: 342 QQSSSTITSSPSSTTLSTSIPTTTTPEITSTLS 374



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/72 (27%), Positives = 38/72 (52%)
 Frame = +2

Query: 422 KRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GIRLRATSTKRS 601
           KR A  +TC   T    S+ +T+  + T+ +T    + +P+S  + T  +   +TST   
Sbjct: 259 KRDAGDNTCDY-TIESTSTSTTTPTTTTVTSTVTSTTTVPTSTSTVTTAM---STSTSTP 314

Query: 602 MTTTSLFCTSSS 637
            T+T++  TS++
Sbjct: 315 STSTTIESTSTT 326


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 25/93 (26%), Positives = 37/93 (39%)
 Frame = +2

Query: 338 TTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRAT 517
           TT   +T  +T   P      T A+        T T    T+   +S +++  S T   T
Sbjct: 283 TTTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSST-STT 341

Query: 518 NVPISKLPSSPRSTT*GIRLRATSTKRSMTTTS 616
               S + SSP STT    +  T+T    +T S
Sbjct: 342 QQSSSTITSSPSSTTLSTSIPTTTTPEITSTLS 374



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/72 (27%), Positives = 38/72 (52%)
 Frame = +2

Query: 422 KRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GIRLRATSTKRS 601
           KR A  +TC   T    S+ +T+  + T+ +T    + +P+S  + T  +   +TST   
Sbjct: 259 KRDAGDNTCDY-TIESTSTSTTTPTTTTVTSTVTSTTTVPTSTSTVTTAM---STSTSTP 314

Query: 602 MTTTSLFCTSSS 637
            T+T++  TS++
Sbjct: 315 STSTTIESTSTT 326


>U41559-1|AAC24260.1|  373|Caenorhabditis elegans Hypothetical
           protein C26B2.8 protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
 Frame = +1

Query: 106 SFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTP---TQVKDEP--SVKWDAEPGQ 270
           +F  +++VP ++P APA  L   + S  ++  G         ++ D P  S   + +  +
Sbjct: 201 TFRENRIVPRLLPVAPAYELIATF-SDEQISMGQLFDADILDKLADPPVMSAGVELQDEK 259

Query: 271 YYTLAMTDPDAPSRKEPTFREWHHWLVGNIQG--NEVNSGETLSQYVGSGPPEKT----G 432
            YT+ + D    + K  T      WLV NI     ++         V   PP+ T    G
Sbjct: 260 LYTIILAD---ATSKAVT------WLVANIAAFDGQLEIHRRTKSAVSYQPPDSTDRPVG 310

Query: 433 LHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKY 558
           +H  +  LY+Q    T+ +  L   + D   +F   E+ ++Y
Sbjct: 311 MHTMILALYEQND--TWTQKDLARIAMD---DFNFTEWLEEY 347


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -1

Query: 558  VLLGELGNFEIGTFVARSVSESRLVECELRWLFVQEEHVSVQACLFRRSR 409
            V+   LG+   G +   +     + EC LR+L   ++H  +  CL  + R
Sbjct: 1536 VVQSVLGDNTAGGYATAAAGVETVDECGLRYLMAMKQHEYLMVCLPMKQR 1585


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/94 (22%), Positives = 40/94 (42%)
 Frame = +2

Query: 338 TTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRAT 517
           TT    T+  T  T  ++  +T  +        T T S+ T    ++ +T+  + T   T
Sbjct: 36  TTEATTTTEITT-TTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTT 94

Query: 518 NVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSL 619
           +   +  P++  STT       T+   + TTT++
Sbjct: 95  STTTTTTPTTTTSTTTTTTTTTTTATPTTTTTTM 128


>AF038618-9|AAB92066.1|  304|Caenorhabditis elegans Hypothetical
           protein F42G8.5 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = +1

Query: 85  AMSTVAKSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEG-NELTPTQVKDEPSVKWDAE 261
           AMS V K  +  ++ P VIP      L  + P+ + V    N L  T V    S   D  
Sbjct: 188 AMSNVVKPHDEKKLYPPVIPGCSTLSLHRRSPNNIFVASPYNTLRATSVGRYQSGFLDTN 247

Query: 262 PGQYYTLAMTDPDAPSRKE 318
                 L    P   SR++
Sbjct: 248 SIMENRLGSRQPSVASRRQ 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,016,103
Number of Sequences: 27780
Number of extensions: 371605
Number of successful extensions: 1264
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)