Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11i17
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa... 99 5e-22
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 29 0.61
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 28 0.80
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 28 1.1
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ... 27 1.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 1.9
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 27 1.9
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 26 3.2
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 5.7
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 7.5
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 25 9.9
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 9.9
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 9.9
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 25 9.9
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 9.9
>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
Psf2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 98.7 bits (235), Expect = 5e-22
Identities = 45/133 (33%), Positives = 81/133 (60%)
Frame = +2
Query: 113 PYEIEFIGENRIISITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKCHVIP 292
P E+EF+ N I+I P+ T D++ L+ + VPLWLA+ LK++ ++P
Sbjct: 13 PEEMEFLAGNEYINIVPSETMDQLPLVSATIPIMKPPKKCRVPLWLALELKKQNLARIVP 72
Query: 293 PDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWD 472
P+WM++ LENI+++E + F+++P ++ A L+L A+D+ + +I+ I+ DI +
Sbjct: 73 PEWMEIGKLENIRDDELENETFSELP-FRWLETAHLLLNFCADDIEDVEDIRRILLDIRE 131
Query: 473 IRMSKLRTSMDAL 511
R SK RT ++A+
Sbjct: 132 ARQSKARTGLEAI 144
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 28.7 bits (61), Expect = 0.61
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +2
Query: 278 CHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYM----VEAKLILGSAAEDVPNAPEI 445
C +P D E+ E + E+ F+TK +E+Y+ +A LIL S E + ++ +
Sbjct: 30 CSSLPSD--ATELCEILVNEQAPREFWTKFAHEYYIRGLREQAILILKSGLETLKDSESL 87
Query: 446 KTIIKDIWDIRMSKLRTSM 502
+ +I I +S R +M
Sbjct: 88 CILNANIAAIYLSMAREAM 106
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 28.3 bits (60), Expect = 0.80
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +2
Query: 413 AAEDVPNAPEIKTIIKDIWDIRMSKL 490
+A DVP+A + +++KD+ D+ MSKL
Sbjct: 368 SATDVPSAEHVDSVLKDV-DVIMSKL 392
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 400 DTWFSCRRCSQCTRNKDYYQRHLGYKNV*VTNINGCIDENWR 525
+TW S RC+ C D LG+K + N CI ++
Sbjct: 340 NTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNTCISSIYK 381
>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 384
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 278 CHVIPPDWMDVEVLENIKEEEKRSRFFT 361
C +P DW+ E + +KE++K + F+
Sbjct: 221 CSFVPKDWVRDEFFDTLKEKKKSCKGFS 248
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 425 VPNAPEIKTIIKDIWDIRMSKLRT 496
+PN PE+K I ++W+ + KL T
Sbjct: 3749 MPNQPEVKQYIPNVWNDVLKKLIT 3772
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 27.1 bits (57), Expect = 1.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 487 VTNINGCIDENWRWLWQIR 543
+TN CID+ W +W +R
Sbjct: 81 ITNFGDCIDDEWYIVWLLR 99
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 210 GPNSPHIKYILSWVKFGVILII 145
GP SP + +W+K G++LI+
Sbjct: 15 GPESPSRRNWKTWIKHGILLIL 36
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 134 GENRIISITPNFTHDKI 184
G+ + ++ITPNFTH I
Sbjct: 143 GKEKWVTITPNFTHTPI 159
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 428 PNAPEIKTIIKDIWDIRMSKLRTSMDALMKTGGGYG 535
PNA ++KT+ K + D+ +S+ S++ K G
Sbjct: 158 PNAEQLKTLSKRLLDLALSEKTHSLNKASKKSNKNG 193
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +2
Query: 374 EHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWDIRMSKLRTSMDALM 514
E Y + K ILG+ +A +++ ++++ + +S + ++AL+
Sbjct: 2 EEYETDIKQILGTVDRQTVSAKQVRQLLEERRKVDLSAHKKDLNALI 48
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 391 SQTDTWFSCRRCSQCTRNKDYYQRHLGY 474
S+TD F C R SQ YY G+
Sbjct: 160 SETDVMFDCMRTSQYPVTSGYYYETGGH 187
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 379 LYGGSQTDTWFSCRRCS-QCTRNKDYYQRHLGYKNV*VTNING 504
+Y GS T TW + R+ + T N YY G+ TN+ G
Sbjct: 1494 IYQGSGTSTWSTVRQWNGSATYNYTYYTTG-GFTGGNNTNVTG 1535
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 24.6 bits (51), Expect = 9.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 496 INGCIDENWRW 528
+ G ID NWRW
Sbjct: 229 VQGIIDSNWRW 239
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 24.6 bits (51), Expect = 9.9
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Frame = -1
Query: 331 FNILQ--NFHVHPVRRDNMALLFLL*HDSQPEWYVHR*TSTKRTKFTAYQVYF------- 179
FNILQ +V+ VR + FL+ + + + + T + +FT + + F
Sbjct: 281 FNILQYNRSNVNAVRGAVRLMRFLMLQEVKND-AIASITLSSSIEFTEFPLGFNENVDFE 339
Query: 178 IMGKVWCYTDYPILTNKLDFIRFH 107
I+G V+ + P + N+L+F+ +H
Sbjct: 340 ILGTVYLFLRTPSILNRLNFLDWH 363
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 130 KLDFIRFHYYFYGFNNL*SFNN 65
K+DFI H+Y F+NL + N
Sbjct: 424 KIDFIACHWYGIDFSNLQDYIN 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,938
Number of Sequences: 5004
Number of extensions: 51692
Number of successful extensions: 145
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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