Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11i17
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1033 - 8178974-8178982,8179123-8179215,8179311-8179341,817... 98 5e-21
11_04_0312 - 16259612-16260231,16260264-16262796 31 0.62
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 29 3.3
11_04_0431 + 17687408-17687603,17687772-17688115,17688951-176892... 28 4.4
09_06_0135 - 21069521-21069646,21069778-21069948,21070438-210705... 28 4.4
09_02_0289 - 6941154-6941399,6941630-6941722,6941801-6941884,694... 27 7.6
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708 27 7.6
06_01_1006 + 7836366-7836460,7836568-7836626,7836877-7836961,783... 27 7.6
>01_01_1033 -
8178974-8178982,8179123-8179215,8179311-8179341,
8179434-8179519,8179572-8179624,8180026-8180140,
8180505-8180579,8180683-8180730
Length = 169
Score = 97.9 bits (233), Expect = 5e-21
Identities = 48/147 (32%), Positives = 83/147 (56%), Gaps = 14/147 (9%)
Frame = +2
Query: 113 PYEIEFIGENRIISITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKCHVIP 292
P E+EF+ E+ I+ I PN + + +ICG+FGPF + VPLWLA+ LK++ KC +
Sbjct: 14 PSEVEFVAEDEIVEIVPNIRMEALNMICGDFGPFFPQIASKVPLWLAVALKKRGKCTIRT 73
Query: 293 PDWMDVE--------------VLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVP 430
PDWM V+ + + E + + F +P HY+ +KL+ A +D+
Sbjct: 74 PDWMTVDSDCLIAYLSVLLLYIFMVLDAERESPKEFQPLP-FHYIEISKLLFDHARDDIS 132
Query: 431 NAPEIKTIIKDIWDIRMSKLRTSMDAL 511
+A ++++I+DI D+R K+ T ++ +
Sbjct: 133 DAYLVRSLIEDIRDVRFHKVETGLETI 159
>11_04_0312 - 16259612-16260231,16260264-16262796
Length = 1050
Score = 31.1 bits (67), Expect = 0.62
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 122 IEFIGENRIIS-ITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKCHVIPPD 298
+EF N I+S I DK++++ G +GP G + V L M QK+ VI D
Sbjct: 186 MEFGSRNEIVSQIINALKEDKVHIV-GVYGPCGIGKSLLVAAILEKMKTQKEFDEVITVD 244
Query: 299 WMDVEVLENIK 331
+ LE IK
Sbjct: 245 LREKPGLEEIK 255
>11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 155 ITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKC-HVIPPDWMDVEVLE 322
+T F ++ C F AG + + L ++ MLK + KC V PD +D E ++
Sbjct: 1094 LTSYFISEQAPFNCKGFSFLVAGFFLAISLGISFMLKPEAKCTRVAVPDQLDHEAVQ 1150
>11_04_0431 +
17687408-17687603,17687772-17688115,17688951-17689287,
17690012-17690087,17690324-17690351,17691047-17691154
Length = 362
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 234 FTGKPARNGPNSPH 193
F G+PARN P+SPH
Sbjct: 255 FLGQPARNDPSSPH 268
>09_06_0135 -
21069521-21069646,21069778-21069948,21070438-21070524,
21070607-21070788,21070905-21070983
Length = 214
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 202 FTAYQVYFIMGKVWCYTDYPILT 134
F A +V + K+WCY +Y I T
Sbjct: 60 FIAMEVVDSLAKIWCYEEYSIAT 82
>09_02_0289 -
6941154-6941399,6941630-6941722,6941801-6941884,
6947011-6947146,6947310-6947455,6947826-6948051,
6948595-6948677,6949004-6949198,6949276-6949374,
6949762-6949875,6949949-6950036,6950353-6950558,
6950850-6950902,6951074-6951377,6952195-6952283,
6952675-6953052,6953665-6953726,6954124-6954189,
6955126-6955205
Length = 915
Score = 27.5 bits (58), Expect = 7.6
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Frame = +2
Query: 242 LWLAIMLKQKQKCHVIPPDWMDV-EVL------------ENIKEEEKRSRFFTKMPNEHY 382
LW A ML K +P WMD EVL + ++ E++ ++F++ P E
Sbjct: 213 LWSAQMLSYAIKKSGVPCSWMDTREVLVVKPSGSNQVDPDYLESEKRLQKWFSRQPAE-- 270
Query: 383 MVEAKLILGSAAEDVP 430
++ A + S AE++P
Sbjct: 271 IIIATGFIASTAENIP 286
>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
Length = 2033
Score = 27.5 bits (58), Expect = 7.6
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +2
Query: 134 GENRIISITPNFTHDKIYLICGEFGPFRAG 223
G++ ++++ PN+ + C + GPF+ G
Sbjct: 325 GDHGVLAVVPNWNCNSTDEFCSQLGPFQTG 354
>06_01_1006 +
7836366-7836460,7836568-7836626,7836877-7836961,
7837349-7837496,7837774-7837986,7838403-7838537,
7838659-7838790,7838884-7839099,7839212-7839336,
7839787-7839844,7839977-7840087
Length = 458
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 377 HYMVE-AKLILGSAAEDVPNAPEIKTIIKDIWDIRMSK 487
H ++E +LI GSA + + +A E+ I+K++W R ++
Sbjct: 344 HRLLEHEELIYGSAEQVLVDAEEVMYIVKELWRGRSAR 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,719,903
Number of Sequences: 37544
Number of extensions: 310016
Number of successful extensions: 732
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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