Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11i17
(556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14697| Best HMM Match : Psf2 (HMM E-Value=8.7e-08) 62 4e-10
SB_40370| Best HMM Match : rve (HMM E-Value=1.3e-37) 31 0.84
SB_47729| Best HMM Match : ASC (HMM E-Value=1.8e-07) 30 1.1
SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_50945| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_47407| Best HMM Match : RnaseH (HMM E-Value=5.9) 29 1.9
SB_22266| Best HMM Match : Dimerisation (HMM E-Value=4.3) 29 1.9
SB_49147| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19) 29 1.9
SB_31504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_10363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_29850| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35) 28 5.9
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 7.8
SB_56354| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19) 27 7.8
SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0) 27 7.8
SB_16657| Best HMM Match : RVT_1 (HMM E-Value=6.4e-18) 27 7.8
>SB_14697| Best HMM Match : Psf2 (HMM E-Value=8.7e-08)
Length = 323
Score = 61.7 bits (143), Expect = 4e-10
Identities = 25/49 (51%), Positives = 39/49 (79%)
Frame = +2
Query: 410 SAAEDVPNAPEIKTIIKDIWDIRMSKLRTSMDALMKTGGGYGRLDHLTM 556
SAAED+P+A E++T++KDIWD+R++KLR S+D ++ + RLD LT+
Sbjct: 243 SAAEDIPHADEVRTLVKDIWDLRVAKLRKSVDLMVGQQAVHARLDDLTL 291
>SB_40370| Best HMM Match : rve (HMM E-Value=1.3e-37)
Length = 1393
Score = 30.7 bits (66), Expect = 0.84
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +2
Query: 296 DWM-DVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWD 472
D+M D + +K +KR + P E + LGSA P+ TI +WD
Sbjct: 694 DFMGDTISADGLKLSDKRVEAIVEAPAPTNQSEVRSFLGSAQFSAKFIPQFATISAPLWD 753
Query: 473 IRMSKLRTSMDALMKTGGGYGRLDHL 550
+ + A K + ++ HL
Sbjct: 754 LTSKNAKWKWGA--KEAESFAQIKHL 777
>SB_47729| Best HMM Match : ASC (HMM E-Value=1.8e-07)
Length = 387
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 379 LYGGSQTDTWFSCRRCSQCTRNKDYYQRHLGYKNV*VTNINGCIDEN 519
LYG + TD + C ++ +KD+ R+ Y + V N G DE+
Sbjct: 153 LYGHNITDMLWECNFMNKPCSHKDFAMRYTSYSLLVVANTKGNDDED 199
>SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1551
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +2
Query: 296 DWM-DVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWD 472
D+M D + +K +KR + P E + LGSA P+ TI +WD
Sbjct: 884 DFMGDTISADGVKLSDKRVEAIVEAPAPTNQSEVRSFLGSAQFCAKFIPQFATISAPLWD 943
Query: 473 IRMSKLRTSMDALMKTGGGYGRLDHL 550
+ + A K + ++ HL
Sbjct: 944 LTSKNAKWKWGA--KEAESFAQIKHL 967
>SB_50945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +2
Query: 296 DWM-DVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWD 472
D+M D + +K +KR + P E + LGSA P+ TI +WD
Sbjct: 123 DFMGDTISADGLKLSDKRVEAIVEAPAPTNQSEVRSFLGSAQFCAKFIPQFATISAPLWD 182
Query: 473 IRMSKLRTSMDALMKTGGGYGRLDHL 550
+ + A K + ++ HL
Sbjct: 183 LTSKNAKWKWGA--KEAESFAQIKHL 206
>SB_47407| Best HMM Match : RnaseH (HMM E-Value=5.9)
Length = 271
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +2
Query: 296 DWM-DVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWD 472
D+M D + +K +KR + P E + LGSA P+ TI +WD
Sbjct: 2 DFMGDTISADGLKLSDKRVEAIVEAPAPTNQSEVRSFLGSAQFCAKFIPQFATISAPLWD 61
Query: 473 IRMSKLRTSMDALMKTGGGYGRLDHL 550
+ + A K + ++ HL
Sbjct: 62 LTSKNAKWKWGA--KEAESFAQIKHL 85
>SB_22266| Best HMM Match : Dimerisation (HMM E-Value=4.3)
Length = 290
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +2
Query: 296 DWM-DVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWD 472
D+M D + +K +KR + P E + LGSA P+ TI +WD
Sbjct: 54 DFMGDTISADGLKLSDKRVEAIVEAPAPTNQSEVRSFLGSAQFCAKFIPQFATISAPLWD 113
Query: 473 IRMSKLRTSMDALMKTGGGYGRLDHL 550
+ + A K + ++ HL
Sbjct: 114 LTSKNAKWKWGA--KEAESFAQIKHL 137
>SB_49147| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19)
Length = 667
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +2
Query: 296 DWM-DVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWD 472
D+M D + +K +KR + P E + LGSA P+ TI +WD
Sbjct: 385 DFMGDTISADGLKLSDKRVEAIVEAPAPTNQSEVRSFLGSAQFCAKFIPQFATISAPLWD 444
Query: 473 IRMSKLRTSMDALMKTGGGYGRLDHL 550
+ + A K + ++ HL
Sbjct: 445 LTSKNAKWKWGA--KEAESFAQIKHL 468
>SB_31504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +2
Query: 296 DWM-DVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWD 472
D+M D + +K +KR + P E + LGSA P+ TI +WD
Sbjct: 68 DFMGDTISADGLKLSDKRVEAIVEAPAPTNQSEVRSFLGSAQFCAKFIPQFATISAPLWD 127
Query: 473 IRMSKLRTSMDALMKTGGGYGRLDHL 550
+ + A K + ++ HL
Sbjct: 128 LTSKNAKWKWGA--KEAESFAQIKHL 151
>SB_10363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +2
Query: 296 DWM-DVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWD 472
D+M D + +K +KR + P E + LGSA P+ TI +WD
Sbjct: 200 DFMGDTISADGLKLSDKRVEAIVEAPAPTNQSEVRSFLGSAQFCAKFIPQFATISAPLWD 259
Query: 473 IRMSKLRTSMDALMKTGGGYGRLDHL 550
+ + A K + ++ HL
Sbjct: 260 LTSKNAKWKWGA--KEAESFAQIKHL 283
>SB_29850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Frame = +2
Query: 296 DWM-DVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWD 472
D+M D + +K +KR + P E + LGSA P+ TI +WD
Sbjct: 68 DFMGDTISADGLKLSDKRVEAIVEAPAPTNQSEVRSFLGSAQFCAKFIPQFATISAPLWD 127
Query: 473 IRMSKLRTSMDALMKTGGGYGRLDHL 550
+ A K + ++ HL
Sbjct: 128 FTSKNAKWKWGA--KEAESFAQIKHL 151
>SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 281 HVIPPDWMDVEVLENIKEEEKRSRFFT-KMPNEHY 382
H++P W D+EVLE+I E + FT M E Y
Sbjct: 309 HIVPT-WQDIEVLESINTELAPLKEFTDAMSRESY 342
>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
Length = 978
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +2
Query: 299 WMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWDI 475
W + V+ N++E + S + + ++ EDVP+AP II+D+++I
Sbjct: 180 WTNWLVVSNLQEFTEYSIKVVGLTKDGIGPSNPAVVAKTKEDVPSAPPDNMIIQDMFNI 238
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 152 SITPNFTHDKIYLICGEFG-PFRAGL 226
S+TPN+ D+ + CG FG P GL
Sbjct: 2539 SLTPNYDRDRKFGFCGGFGIPVTRGL 2564
>SB_56354| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19)
Length = 340
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Frame = +2
Query: 296 DWM-DVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWD 472
D+M D + +K +K + P E + LGSA P+ TI +WD
Sbjct: 185 DFMGDTISADGLKLSDKSVEAIVEAPAPTNQSEVRTFLGSAQFCAKFIPQFATISAPLWD 244
Query: 473 IRMSKLRTSMDALMKTGGGYGRLDHL 550
+ + A K + ++ HL
Sbjct: 245 LTSKNAKWKWGA--KEAESFAQIKHL 268
>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +1
Query: 382 YGGSQTDTWFSCRRCSQCTRNKDYYQRH 465
Y DTW+ C+ C + + Y+ RH
Sbjct: 181 YDVHSPDTWYPCQMCQRKFSSIHYFNRH 208
>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 2538
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 406 KYQFGFHHIVFIWHLCEESGTLFLFFN 326
K+ FG VF+ H+ +ESG LF+ N
Sbjct: 6 KFPFGTSVDVFVTHVDQESGNLFVQIN 32
>SB_16657| Best HMM Match : RVT_1 (HMM E-Value=6.4e-18)
Length = 1138
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 296 DWM-DVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWD 472
D+M D + +K +KR + P E + LGSA P+ TI +WD
Sbjct: 600 DFMGDTISADGLKLSDKRVEAIVEAPAPTNQSEVRSFLGSAQFCAKFIPQFATISAPLWD 659
Query: 473 I 475
+
Sbjct: 660 L 660
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,773,553
Number of Sequences: 59808
Number of extensions: 355041
Number of successful extensions: 1013
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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