Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i17
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12530.1 68416.m01559 DNA replication protein-related similar...    99   2e-21
At2g21050.1 68415.m02499 amino acid permease, putative similar t...    31   0.52 
At3g46270.1 68416.m05008 receptor protein kinase-related contain...    30   0.90 
At5g16520.1 68418.m01932 expressed protein                             30   1.2  
At5g03230.1 68418.m00271 expressed protein contains Pfam profile...    29   2.8  
At3g49450.1 68416.m05405 F-box family protein contains F-box dom...    28   3.6  
At3g05710.2 68416.m00639 syntaxin, putative similar to syntaxin ...    28   3.6  
At3g05710.1 68416.m00638 syntaxin, putative similar to syntaxin ...    28   3.6  
At3g46280.1 68416.m05009 protein kinase-related contains similar...    28   4.8  
At4g27220.1 68417.m03909 disease resistance protein (NBS-LRR cla...    27   6.4  
At1g31490.1 68414.m03855 transferase family protein contains sim...    27   6.4  
At3g46260.1 68416.m05007 protein kinase-related contains low sim...    27   8.4  
At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase famil...    27   8.4  
At1g04920.1 68414.m00489 sucrose-phosphate synthase, putative si...    27   8.4  

>At3g12530.1 68416.m01559 DNA replication protein-related similar to
           DNA replication protein Psf2 (GI:29365481) [Xenopus
           laevis]; contains Pfam profile PF04128: Domain of
           unknown function (DUF392)
          Length = 191

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 46/131 (35%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
 Frame = +2

Query: 131 IGENRIISITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKCHVIPPDWMDV 310
           + E+ ++ I PN   +++  I G+FG F   +P  VPLWLA+ LK++ KC   PP WM V
Sbjct: 1   MAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLAVALKRRGKCTFRPPGWMSV 60

Query: 311 EVLENIKEEEKRSR-FFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWDIRMSK 487
           + L  I E E+ S+  F  +P   Y+  A+L+   A +D+P+   ++++++DI D+R+ K
Sbjct: 61  DNLTQILEAERESQSTFQALPFS-YVEIARLLFDHARDDIPDMYMVRSLVEDIRDVRLHK 119

Query: 488 LRTSMDALMKT 520
           L T++ +   T
Sbjct: 120 LETNLGSFQGT 130


>At2g21050.1 68415.m02499 amino acid permease, putative similar to
           AUX1 [Arabidopsis thaliana] GI:1531758; contains Pfam
           profile PF01490: Transmembrane amino acid transporter
           protein
          Length = 483

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 310 GSFGEY*RRGKAFQILHKDAK*TLYGGSQTDTWFSC 417
           G++ E  + GKA  I  K +    +GGS  D WFSC
Sbjct: 14  GNYVEMEKDGKALDIKSKLSDMFWHGGSAYDAWFSC 49


>At3g46270.1 68416.m05008 receptor protein kinase-related contains
           weak similarity to light repressible receptor protein
           kinase (GI:1321686) [Arabidopsis thaliana]
          Length = 470

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 184 YFIMGKVWCYTDYPILTNKLDFIRFHYYFYGFNN 83
           YF  G+  CYT+ P+   +   +R  YY+  +++
Sbjct: 76  YFPTGQTNCYTNIPVTKGRKTLVRTKYYYENYDD 109


>At5g16520.1 68418.m01932 expressed protein 
          Length = 608

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 288 ITWHFCFCFSMIASQSGTFTGKPARNGPNSPHIKYILSWVKFGVIL 151
           I+WHF       A+  G      ++NGPN  H+ ++   ++ G IL
Sbjct: 253 ISWHFVDLPDSPAAAVGFQFNFTSKNGPNEKHMSFVSGTLRNGSIL 298


>At5g03230.1 68418.m00271 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 166

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 224 LPVNVPLWLAIMLKQKQKCHVIPPDWMD 307
           LPVN+P W  I LK + + H IP D  D
Sbjct: 79  LPVNIPDWSKI-LKSEYRGHAIPDDDSD 105


>At3g49450.1 68416.m05405 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 397

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 203 FGPFRAGLPVNVPLWLAIMLKQK--QKCHVIPPDWMDV 310
           FG F  G  V   LW+  ++ Q+  +  HV+PP W DV
Sbjct: 291 FG-FMDGGDVGFELWILDVVNQEWIRSIHVLPPMWKDV 327


>At3g05710.2 68416.m00639 syntaxin, putative similar to syntaxin of
           plants 42 [Arabidopsis thaliana] GI:5059352
          Length = 331

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = +2

Query: 287 IPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDI 466
           +PPDW+DV   E I    +R+R  TKM  E     AK ++ S  +   +  +I+T+ +++
Sbjct: 83  LPPDWVDVS--EEISVYIQRAR--TKMA-ELGKAHAKALMPSFGDGKEDQHQIETLTQEV 137


>At3g05710.1 68416.m00638 syntaxin, putative similar to syntaxin of
           plants 42 [Arabidopsis thaliana] GI:5059352
          Length = 330

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = +2

Query: 287 IPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDI 466
           +PPDW+DV   E I    +R+R  TKM  E     AK ++ S  +   +  +I+T+ +++
Sbjct: 82  LPPDWVDVS--EEISVYIQRAR--TKMA-ELGKAHAKALMPSFGDGKEDQHQIETLTQEV 136


>At3g46280.1 68416.m05009 protein kinase-related contains similarity
           to light repressible receptor protein kinase
           [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 471

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 184 YFIMGKVWCYTDYPILTNKLDFIRFHYYFYGFN 86
           YF  G+  CYT+ P+   +   +R  +Y+  ++
Sbjct: 71  YFPTGQTNCYTNIPVTKGQKTLVRTKFYYENYD 103


>At4g27220.1 68417.m03909 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 919

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +2

Query: 233 NVPLWLAIMLKQKQKCHVIPPDWMDVEVLENIKEEEKRSRFFTK--MPNEHYMVEAKLIL 406
           NVPL   ++L+++  C +   D  DVE+LE +K  E++ +   K    N+      + +L
Sbjct: 51  NVPLG-ELILEKRSSCAIWLSD-KDVEILEKVKRLEEQGQDLIKKISVNKSSREIVERVL 108

Query: 407 GSAAEDVPNAPEIKTIIKD 463
           G +      A E+   +KD
Sbjct: 109 GPSFHPQKTALEMLDKLKD 127


>At1g31490.1 68414.m03855 transferase family protein contains
           similarity to anthranilate N-hydroxycinnamoyl
           benzoyltransferase GI:3288180, GI:2239091 from (Dianthus
           caryophyllus); contains Pfam profile PF02458 transferase
           family
          Length = 444

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 395 KLILGSAAEDVPNAPEIKTIIKDIWDIRMSKLRTSMDALMKTGG 526
           K  +  + ED+ N P  KT+IK ++ I  S L  ++ AL    G
Sbjct: 204 KTFIKCSEEDIKNIPMSKTLIKRLYHIGASSL-DALQALATVNG 246


>At3g46260.1 68416.m05007 protein kinase-related contains low
           similarity to light repressible receptor protein kinase
           [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 434

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 184 YFIMGKVWCYTDYPILTNKLDFIRFHYYFYGFN 86
           YF  G+  CYT+ P    +   +R  +Y+  ++
Sbjct: 75  YFPTGQTNCYTNIPATKGRTTLVRTKFYYKNYD 107


>At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase family
           protein similar to sphingosine-1-phosphate lyase [Homo
           sapiens] GI:10129683; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
          Length = 544

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 263 KQKQKCHVIPPDWMDVEVLENIKEEEKRS 349
           K+K K  V+P   + VEVLE + E EKR+
Sbjct: 98  KKKNKTEVLPVKGLGVEVLEKM-ENEKRN 125


>At1g04920.1 68414.m00489 sucrose-phosphate synthase, putative
           similar to GB:Y11795 from [Craterostigma plantagineum]
          Length = 1062

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 240 HSGWLSC*S-RNKSAMLSLLTGWTWKFWRILKKRKSVP-DSSQR 365
           H  WL   + RN     S L    W+ W + +K+K +  + SQR
Sbjct: 63  HRTWLKVVATRNSRERNSRLENMCWRIWHLTRKKKQLEWEDSQR 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,167,722
Number of Sequences: 28952
Number of extensions: 259942
Number of successful extensions: 640
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)