Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i15
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    26   6.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   7.9  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   7.9  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   7.9  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    25   7.9  

>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 41  LAYVLLKSNSFEMATSDSEDFESADEGQNTPIKKDRKERLSSSNYTENSRELDH 202
           + Y  + S S E  T +SE  ++  +  NTP K +    L+++   +NS   D+
Sbjct: 4   MLYEGIDSKSIEEITEESEKTKTDLQKANTPNKTEAVHSLNNTCSEQNSGTKDY 57


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 503  ELVCRDPQSYYHLVPNHQNHPNRYLYSLFL 414
            E++  D    YHL+P   +  +  L+SLFL
Sbjct: 1037 EIIISDLTRTYHLIPRGSSTVSIILFSLFL 1066


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 473 NTIEDPYKPIQTQPTRQETKSIYPD 547
           ++I +PY+P  TQPT  E     PD
Sbjct: 512 DSIHEPYRPASTQPT--ENPPAMPD 534


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 59  KSNSFEMATSDSEDFESADEGQNTPIKKDRKERLSSS 169
           K+N+FE    +    E  +E    P++K++K    +S
Sbjct: 85  KANAFEAFADEQSVEEEEEEDSEKPVRKNKKSSKKAS 121


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 396 RQQRNLKKQRVKIPVGMILMIGDKMIIRLRIPTNQFRLSQH 518
           ++Q  +KK+   +P       GD+  +R++ PT ++    H
Sbjct: 141 KKQFYVKKEPFPVPCTEPTTSGDRYTVRMKAPTPKYSTDNH 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,711
Number of Sequences: 5004
Number of extensions: 53164
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)