Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i15
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0375 - 43152161-43152262,43152556-43152664,43153433-431535...    31   0.89 
04_03_0768 - 19396146-19396607,19397855-19398175,19398424-193995...    29   2.7  
03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603...    28   8.3  

>01_07_0375 -
           43152161-43152262,43152556-43152664,43153433-43153504,
           43153690-43153834,43153930-43154085,43154557-43154618,
           43154695-43155020
          Length = 323

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 527 FPVVLAESELVCRDPQSYYHLVPNHQNHPNRYLYSLFLQ 411
           F V+ A  ELV  D QSY +LV + +  PN+  ++  +Q
Sbjct: 260 FSVIPAVGELVAGDRQSYQYLVESIRRFPNQEKFAQMIQ 298


>04_03_0768 -
           19396146-19396607,19397855-19398175,19398424-19399569,
           19400073-19400855,19402114-19402149
          Length = 915

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 62  SNSFEMATSDSEDFESADEGQNTPIKKDRKERLSSSNYTENSRE 193
           S++ E AT D+EDFE +D+  +    K RK      ++ EN+ +
Sbjct: 38  SSNSEAAT-DNEDFEISDDDDDDRNHKHRKREARPQSFDENTEQ 80


>03_06_0759 -
           36059872-36059928,36059934-36060125,36060241-36060348,
           36060440-36060712,36060923-36061009,36061085-36061276,
           36061841-36061969,36062087-36062200,36062446-36062490,
           36062785-36062956,36063229-36063515,36063989-36064456
          Length = 707

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 622 TPSPTPAPGSAGCRG 578
           +PSPTP+  SA CRG
Sbjct: 50  SPSPTPSSSSAACRG 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,256,899
Number of Sequences: 37544
Number of extensions: 316901
Number of successful extensions: 947
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)