Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i15
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54715| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)               29   4.8  
SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8)                    23   7.0  
SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_54715| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)
          Length = 1143

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +2

Query: 59  KSNSFEMATSD--SEDFESADEGQNTPIKKDRKERLSSSNYTENSRELDHXXXXXXXXXX 232
           KS  +    SD  S+D E++D  +   IKK +K++       +N ++             
Sbjct: 748 KSRKYSTTDSDCSSDDGENSDSSRERSIKKHKKKKKRKKKIKKNRKKTMENESKNEKNKR 807

Query: 233 DTVKNKEE 256
             VKN E+
Sbjct: 808 GPVKNNED 815


>SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8)
          Length = 815

 Score = 23.4 bits (48), Expect(2) = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 482 QSYYHLVPNHQNHPNRYLYSL 420
           +S ++LVP     PNRYL+ L
Sbjct: 362 KSQHNLVPIANIRPNRYLHHL 382



 Score = 23.0 bits (47), Expect(2) = 7.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 308 IFHHHQYQNHPNRQK 264
           + HHH + NH N  K
Sbjct: 387 LHHHHLHHNHKNDHK 401


>SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 331 GYCVLCYQYFIITNIK-IIPTVRRFRFLFVFHSVGR 227
           G  + CY YF+IT  + + P  R  + L  FH + +
Sbjct: 788 GTAMACYAYFVITRQEYLYPDARDRQHLLAFHKLSK 823


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,552,120
Number of Sequences: 59808
Number of extensions: 382338
Number of successful extensions: 899
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)