Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i15
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.6  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 335 NTHVLQSNKNETIDSNYSQ 391
           NTH + +N+N+ I +  +Q
Sbjct: 411 NTHCVNNNQNDNIQNTNNQ 429


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 414 KKQRVKIPVGMILMIGDKMIIRLRIPTNQFRLS 512
           +KQ  +  + +  +  +K+I   R P NQF+ S
Sbjct: 144 EKQICRPKIHVFSLHDNKLITMYRFPQNQFKES 176


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -2

Query: 367 FIFIGLQYMSVRGYCVLCYQYFIITNIKIIPTVRRFRFLFVFHSVGR*RLCFF--CFVVQ 194
           ++F  L   +V G+C+L   +F    I     V RF +  +   +G    C++  C+ + 
Sbjct: 440 YVFQLLDSYAVSGFCLLFLMFFECIAISWAFGVNRF-YDGIRDMIGYYPCCWWKICWTIT 498

Query: 193 FPTI 182
            P I
Sbjct: 499 TPAI 502


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -2

Query: 367 FIFIGLQYMSVRGYCVLCYQYFIITNIKIIPTVRRFRFLFVFHSVGR*RLCFF--CFVVQ 194
           ++F  L   +V G+C+L   +F    I     V RF +  +   +G    C++  C+ + 
Sbjct: 493 YVFQLLDSYAVSGFCLLFLMFFECIAISWAFGVNRF-YDGIRDMIGYYPCCWWKICWTIT 551

Query: 193 FPTI 182
            P I
Sbjct: 552 TPAI 555


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,182
Number of Sequences: 438
Number of extensions: 4684
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)