Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i15
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43520.1 68418.m05321 DC1 domain-containing protein contains ...    28   6.9  
At1g71380.1 68414.m08241 glycosyl hydrolase family 9 protein sim...    28   6.9  
At5g27690.1 68418.m03321 heavy-metal-associated domain-containin...    27   9.1  
At1g06410.1 68414.m00678 glycosyl transferase family 20 protein ...    27   9.1  

>At5g43520.1 68418.m05321 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 250

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 324 QYPLTLMYCSPIKMKQ*TRIT 386
           ++PLTL+YC+P K ++ T  T
Sbjct: 135 EHPLTLLYCTPCKGREDTYFT 155


>At1g71380.1 68414.m08241 glycosyl hydrolase family 9 protein
           similar to beta-glucanase GB:AAB72171
          Length = 484

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +2

Query: 14  IFSLVNSYLLAYVLLKSNSFEMATSDSEDFESADEGQNTPIKKDRKERLSSSNYTE 181
           IFS  N Y  AYVLL   +     S+ E ++ A E     I  D     SS+ YT+
Sbjct: 267 IFSWDNKYAGAYVLLSRRALLNKDSNFEQYKQAAENFICKILPDSPS--SSTQYTQ 320


>At5g27690.1 68418.m03321 heavy-metal-associated domain-containing
           protein very low similarity to copper homeostasis factor
           from Arabidopsis thaliana [gi:3168840]; contains Pfam
           heavy metal associated domain PF00403
          Length = 352

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 311 PIFHHHQYQNHP 276
           P  HHHQ QNHP
Sbjct: 229 PHLHHHQQQNHP 240


>At1g06410.1 68414.m00678 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein contains Pfam
           profile: PF02358 trehalose-phosphatase
          Length = 851

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 370 CFIFIGLQYMSVRGYCVLCYQYFIITNIKIIP 275
           C   +GL+Y S RGY  L Y Y     IKI+P
Sbjct: 271 CSRMLGLEYQSKRGYIGLEY-YGRTVGIKIMP 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,615,796
Number of Sequences: 28952
Number of extensions: 266984
Number of successful extensions: 774
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)