Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i14
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    24   1.0  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    21   7.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   7.1  

>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 599 VESQETDRAHQQASTGDPRPA 661
           ++S  + R+HQ A+   PRPA
Sbjct: 241 LQSSGSSRSHQPATKSKPRPA 261


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 423 AKLYGRELSTYDEVDVDELL--SKLTQEELTMLAKE 524
           A +Y  E +    +D+DE+L   +LT+  L  + ++
Sbjct: 14  AYVYAEEYTVPQNIDIDEILKNDRLTKNYLDCILEK 49


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 441 ELSTYDEVDVDELLSKLTQEELTMLAKEVDPDD 539
           E+ +     V+ LLSK   EE+     + D DD
Sbjct: 7   EIKSKISFSVESLLSKKEDEEVEHRLSDRDDDD 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,991
Number of Sequences: 336
Number of extensions: 3131
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)