Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i14
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    31   0.20 
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    28   1.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.8  

>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 973

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 14/66 (21%), Positives = 30/66 (45%)
 Frame = +3

Query: 441  ELSTYDEVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYACEKDPTGPLNRKKLI 620
            E S  + + V++  +++  E L  ++    P    +PP Q  N      P+GP+    L+
Sbjct: 907  EASQTESILVEKEATRVANEALRAVSSFRRPPRQLIPPQQSTNVPGTSKPSGPITSSTLL 966

Query: 621  EHINKQ 638
              + ++
Sbjct: 967  ARLKQR 972


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 554 RWKEIVVRINLLCQHGQFFLSELGQELVHVHFV 456
           R KEI  R+ + C+  + F+  L ++++  HF+
Sbjct: 57  RLKEIYCRLKIRCRLKKKFIKSLSKKIISYHFI 89


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 165  VISKRCLKRENFSECVSKVVPISVLLVY*GLLVNMTEFFGS 287
            + SK+   R+N    V K+ PI+VLL   GLL    E FG+
Sbjct: 2509 IASKKSAGRKNRESNVYKIAPINVLL---GLLAR-EELFGN 2545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,959
Number of Sequences: 5004
Number of extensions: 50601
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)