Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i14
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    30   2.0  
07_01_0346 - 2501825-2501908,2502143-2502244,2502623-2502646,250...    29   3.4  
04_04_0287 - 24156285-24156389,24156477-24156596,24156654-241567...    29   3.4  
08_02_1559 - 27873345-27873407,27873549-27873830,27874162-278742...    28   7.9  

>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 430 CTGGSCLHTTKWTWTSSCP-SSLKKN*PCWQ 519
           C  GSC+ T +   T SC    LKK  PC+Q
Sbjct: 378 CHRGSCVETCRLVITKSCRCGGLKKEVPCYQ 408


>07_01_0346 -
           2501825-2501908,2502143-2502244,2502623-2502646,
           2502693-2502819,2503122-2505109,2505804-2505821
          Length = 780

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 247 YTRSTEIGTTFETHSLKFSRLR-HLFDITV 161
           Y RS +IG+ FE  +   SRLR HL D  V
Sbjct: 75  YHRSCDIGSNFEAFATVMSRLRQHLLDANV 104


>04_04_0287 -
           24156285-24156389,24156477-24156596,24156654-24156740,
           24156905-24157057,24157516-24157635,24157788-24157949,
           24158029-24158247,24158574-24158616,24159147-24159210,
           24159353-24159458,24159585-24159704,24159831-24159911,
           24160008-24160050,24160308-24160369,24160477-24160563,
           24161004-24161050,24161144-24161276,24161419-24161487,
           24161924-24162010,24162317-24162448
          Length = 679

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 456 DEVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYACEKDP 590
           +E D+D +L  + +EE     KEV  D+N   PS R+N +   +P
Sbjct: 36  EEDDIDAILRSIQKEEAKK--KEVHIDENVPAPSPRSNCSLTINP 78


>08_02_1559 -
           27873345-27873407,27873549-27873830,27874162-27874263,
           27874402-27874872
          Length = 305

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 410 YDDPGQIVRAGVVYIRRSGRGR 475
           + + G++V A VVY R SGR R
Sbjct: 241 FSEHGEVVNASVVYDRESGRSR 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,826,380
Number of Sequences: 37544
Number of extensions: 358624
Number of successful extensions: 972
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)