Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i14
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97193-8|AAB52440.3|  392|Caenorhabditis elegans Tropomodulin pr...    66   2e-11
U97193-9|AAL13319.1|  401|Caenorhabditis elegans Tropomodulin pr...    60   1e-09
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U37429-8|AAN63414.1|  186|Caenorhabditis elegans Boca/mesd chape...    29   4.1  

>U97193-8|AAB52440.3|  392|Caenorhabditis elegans Tropomodulin
           protein 1, isoform a protein.
          Length = 392

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 31/85 (36%), Positives = 51/85 (60%)
 Frame = +3

Query: 423 AKLYGRELSTYDEVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYACEKDPTGPL 602
           +K+Y + L   ++ D++ LLS L+ +EL  L  + DPD++ LPPSQR     +K+PTGP 
Sbjct: 30  SKVYNKGLKDLEDNDIEGLLSSLSIDELEDLNNDFDPDNSMLPPSQRCRDQTDKEPTGPY 89

Query: 603 NRKKLIEHINKQALETPDRPEVKPF 677
            R  L++ +  +A    D  +V P+
Sbjct: 90  KRDNLLKFLEDKAKTEKDWEDVCPY 114


>U97193-9|AAL13319.1|  401|Caenorhabditis elegans Tropomodulin
           protein 1, isoform b protein.
          Length = 401

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 31/85 (36%), Positives = 50/85 (58%)
 Frame = +3

Query: 423 AKLYGRELSTYDEVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYACEKDPTGPL 602
           +K+Y + L    + D++ LLS L+ +EL  L  + DPD++ LPPSQR     +K+PTGP 
Sbjct: 42  SKVYNKGLK---DNDIEGLLSSLSIDELEDLNNDFDPDNSMLPPSQRCRDQTDKEPTGPY 98

Query: 603 NRKKLIEHINKQALETPDRPEVKPF 677
            R  L++ +  +A    D  +V P+
Sbjct: 99  KRDNLLKFLEDKAKTEKDWEDVCPY 123


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 344 DHHHNHYKDPNYPKIILN 397
           +HHH+H++ P YP+   N
Sbjct: 29  NHHHHHHQSPTYPQSYFN 46


>U37429-8|AAN63414.1|  186|Caenorhabditis elegans Boca/mesd
           chaperone for ywtd beta-propeller-egf protein 1 protein.
          Length = 186

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
 Frame = +3

Query: 438 RELSTYDEVDVDELLSKLTQEELTMLAKEVDPDDNFLPP--SQRNNYACEKDPTGPLNRK 611
           ++LS+Y + ++++L  +  + +   L ++  P+    PP     +  A  KDP   L   
Sbjct: 25  KDLSSYTDAELEKLYEEWEENDEDELEEDEKPEHKRKPPQLDLESMKAKAKDPEDLLMMS 84

Query: 612 K----LIEHINKQALETPDRPEVKPF 677
           K    L+  +       PDR +++PF
Sbjct: 85  KKGQTLMLFVGVVDPSQPDRSDIRPF 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,872,236
Number of Sequences: 27780
Number of extensions: 298856
Number of successful extensions: 817
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)