Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11i14
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g50310.1 68418.m06229 kelch repeat-containing protein similar... 30 1.2
At1g06660.1 68414.m00706 expressed protein 29 3.8
At4g19330.1 68417.m02848 kelch repeat-containing F-box family pr... 28 5.0
At2g36890.1 68415.m04524 myb family transcription factor (MYB38)... 28 5.0
At1g79150.1 68414.m09229 expressed protein ; expression supporte... 28 5.0
At5g38730.1 68418.m04684 pentatricopeptide (PPR) repeat-containi... 28 6.6
At1g43670.1 68414.m05016 fructose-1,6-bisphosphatase, putative /... 28 6.6
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ... 27 8.7
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ... 27 8.7
>At5g50310.1 68418.m06229 kelch repeat-containing protein similar to
Kelch repeats protein 3 (SP:Q08979) [Saccharomyces
cerevisiae]; contains Pfam PF01344: Kelch motif (6
repeats)
Length = 666
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +3
Query: 423 AKLYGRELSTYDEVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYACEKDP 590
A+ G++LS D D+D +L + +EE KEV ++N PS R+N + +P
Sbjct: 27 ARREGKKLSPED--DIDAILLNIQKEEAKK--KEVHVEENVAAPSPRSNCSLTINP 78
>At1g06660.1 68414.m00706 expressed protein
Length = 481
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +1
Query: 274 NSSDHGTRDRRKKMGKKRWWSLSRPSPQPLQ 366
NSS++G+ R+ +MG K +++S P+P PL+
Sbjct: 236 NSSENGS-SRKPEMGGKICFTVSSPNPTPLK 265
>At4g19330.1 68417.m02848 kelch repeat-containing F-box family
protein very low similarity to SKP1 interacting partner
6 [Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 537
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 504 LTMLAKEVDPDDNFLPPSQRNNYACEKDPTGPLNRK 611
L +L+KE+D + ++L + Y C + PT P +R+
Sbjct: 208 LLILSKELDMERSYLGTRKPCVYVCLQSPTHPFDRR 243
>At2g36890.1 68415.m04524 myb family transcription factor (MYB38)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 298
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 344 DHHHNHYKDPNYPKIILNKDYNYDDPGQIV 433
DHHH+H +D ++ +DY ++ Q++
Sbjct: 243 DHHHHHEEDERSMTSVVMEDYGMEEIKQLI 272
>At1g79150.1 68414.m09229 expressed protein ; expression supported
by MPSS
Length = 495
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +3
Query: 483 SKLTQEELTMLAKEVDPDDNFLPPSQRNNYACEKDPTGPLNRKKLIEHINKQALETP 653
SKL + E K+V D++ L SQR A + + K L + I ++ ETP
Sbjct: 113 SKLAEAETDEAEKDVLEDEHVLNKSQRREKAKKSKREAKKHEKDLPDEILQEEEETP 169
>At5g38730.1 68418.m04684 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 596
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 436 GGSCLHTTKWTWTSSCPSSLKKN*PCWQRRLILTTISFHRHSVT 567
GG L + + WT S PSS W+ LILT H+H T
Sbjct: 58 GGPSLSWSFFIWTDSLPSSKHSLQSSWKMILILTK---HKHFKT 98
>At1g43670.1 68414.m05016 fructose-1,6-bisphosphatase, putative /
D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative
/ FBPase, putative very strong similarity to SP|P46267
Fructose-1,6-bisphosphatase, cytosolic (EC 3.1.3.11)
(D-fructose-1,6- bisphosphate 1-phosphohydrolase)
(FBPase) {Brassica napus}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 341
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 429 LYGRELSTYDEVDVDELLSKLTQEELT-MLAKEVDPDDNFLPPSQRNNYACEKDP 590
+ G E D + D ++ L T +L E D + F+ PS+R Y DP
Sbjct: 68 IQGEEQKKLDVLSNDVFVNALVSSGRTSVLVSEEDEEATFVEPSKRGKYCVVFDP 122
>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 765
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 435 GRELSTYDEVDVDELLSKLTQEELTMLAKEVD 530
GR L ++V+ D K QE++ L++E+D
Sbjct: 68 GRSLQKAEQVEADSAQLKQLQEQVASLSREID 99
>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 788
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 435 GRELSTYDEVDVDELLSKLTQEELTMLAKEVD 530
GR L ++V+ D K QE++ L++E+D
Sbjct: 68 GRSLQKAEQVEADSAQLKQLQEQVASLSREID 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,017,347
Number of Sequences: 28952
Number of extensions: 279678
Number of successful extensions: 803
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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