Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i08
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    31   0.63 
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    31   1.1  
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p...    29   2.5  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z69902-12|CAA93771.2|  525|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z47074-1|CAA87375.2|  851|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL033535-2|CAA22132.2|  525|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z70307-6|CAA94332.1|  210|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = -3

Query: 442 KPPPVFMTALPEDGMLPSTATVP*TGKQPLTFIVPPIGMSPVTEMSPNCRE 290
           +PPP   TA P     P+T   P T   P T   PP    P     P  RE
Sbjct: 294 QPPPRGSTAAPGTRAPPATRAPPATRAPPATTRAPPATTRPAPASQPPVRE 344


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 107  LPRVELVQPLRLIPLHSHSSDRERPGHGHLLTELL*P 217
            +P V++V  L L  LH H+    RP   H + EL+ P
Sbjct: 1449 IPHVKIVSHLPLFQLHPHAKHLVRPAMIHAIKELIGP 1485


>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical
           protein T11G6.5 protein.
          Length = 1406

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -3

Query: 463 GSMY*VTKPPPVF---MTALPEDGMLPSTATVP*TGKQPLTFIVPPIGMSPVTEMSPN 299
           GS     +PPPV     +ALP  G   S   VP     P +FI+P I   P   +S N
Sbjct: 624 GSPTQFNRPPPVLHSPRSALPSAGPFSSPQPVPRFNGPPSSFILPSIYPPPPPGVSLN 681


>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
           protein T11G6.5 protein.
          Length = 1406

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -3

Query: 463 GSMY*VTKPPPVF---MTALPEDGMLPSTATVP*TGKQPLTFIVPPIGMSPVTEMSPN 299
           GS     +PPPV     +ALP  G   S   VP     P +FI+P I   P   +S N
Sbjct: 624 GSPTQFNRPPPVLHSPRSALPSAGPFSSPQPVPRFNGPPSSFILPSIYPPPPPGVSLN 681


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +3

Query: 90  PMSGNGCLGSNLYS-PYGSSLYI-PTVATGNGQATVTSLPNCFSPATGF 230
           P +  G  G N  S P+G + Y  PT  TG G A  T  P    P  GF
Sbjct: 60  PQAQYGNAGQNQPSGPFGGAGYTGPTAGTGFGNAGYTPSPPAGVPGNGF 108


>Z69902-12|CAA93771.2|  525|Caenorhabditis elegans Hypothetical
           protein VF13D12L.1 protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/83 (25%), Positives = 33/83 (39%)
 Frame = +3

Query: 75  GILSLPMSGNGCLGSNLYSPYGSSLYIPTVATGNGQATVTSLPNCFSPATGFPDYGPVRT 254
           G+L + + GN   GS       ++ Y  T  T  G +      +    AT    Y     
Sbjct: 66  GLLLVGLGGNN--GSTAVGSIFANQYAMTWRTKEGHSQANYFGSVTQTATVHLGYDSATQ 123

Query: 255 NQVTPLVTEIVPSLQFGDISVTG 323
           NQ+     +IVP L   D+ ++G
Sbjct: 124 NQIFVPFKDIVPILSPNDLIISG 146


>Z47074-1|CAA87375.2|  851|Caenorhabditis elegans Hypothetical
           protein K07C10.1 protein.
          Length = 851

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
 Frame = +3

Query: 63  VLIQGILSLPMSGNGCLGSNLY---SPYGSSLYI-PTVATGNGQATVTSLPNCFSPATGF 230
           +LI G +  P++  G   + L     P+ S + I P +  G G      L NC+    G 
Sbjct: 292 MLIAGAIGSPLAATGACFAILGWVGHPFNSIMCITPFLILGIGVDDAFLLLNCWRREEGK 351

Query: 231 PDYGPVRTNQVTPLVTEIVPSLQFGDISVTGDMPIG 338
                   NQ+  ++ EI PS+     S+T  M  G
Sbjct: 352 DKSAKQAENQLARVIREISPSMAI--TSLTNTMAFG 385


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = -2

Query: 410  RRRHVTIDGDRAVNREATAHFYRAAYRHVPCDRNVTELQRR-----HDLGDQGRHLVSAD 246
            R RH   DG+R  N++ + H  +   R    DRN  + Q R     H+ GD+       D
Sbjct: 930  RNRHRNHDGNRHQNQDRSRHHNQDRNRRQNHDRNRHQSQGRNRQQDHERGDEAHEEARPD 989

Query: 245  --GAVVRK 228
              G  VR+
Sbjct: 990  RIGQAVRR 997


>AL033535-2|CAA22132.2|  525|Caenorhabditis elegans Hypothetical
           protein VF13D12L.1 protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/83 (25%), Positives = 33/83 (39%)
 Frame = +3

Query: 75  GILSLPMSGNGCLGSNLYSPYGSSLYIPTVATGNGQATVTSLPNCFSPATGFPDYGPVRT 254
           G+L + + GN   GS       ++ Y  T  T  G +      +    AT    Y     
Sbjct: 66  GLLLVGLGGNN--GSTAVGSIFANQYAMTWRTKEGHSQANYFGSVTQTATVHLGYDSATQ 123

Query: 255 NQVTPLVTEIVPSLQFGDISVTG 323
           NQ+     +IVP L   D+ ++G
Sbjct: 124 NQIFVPFKDIVPILSPNDLIISG 146


>Z70307-6|CAA94332.1|  210|Caenorhabditis elegans Hypothetical
           protein C39E9.6 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 235 SGNPVAGLKQFGKEVTVAW 179
           SG+P + L +FGK  TVAW
Sbjct: 95  SGDPFSDLDKFGKIATVAW 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,595,657
Number of Sequences: 27780
Number of extensions: 376592
Number of successful extensions: 921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)