Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i08
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29380.1 68414.m03592 hypothetical protein                          30   1.3  
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica...    29   4.1  
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica...    29   4.1  
At2g45340.1 68415.m05642 leucine-rich repeat transmembrane prote...    28   5.4  
At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2...    28   5.4  
At1g74790.1 68414.m08665 expressed protein contains similarity t...    28   5.4  
At5g64440.1 68418.m08095 amidase family protein low similarity t...    28   7.2  
At5g18610.1 68418.m02203 protein kinase family protein contains ...    28   7.2  
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    28   7.2  
At2g03200.1 68415.m00273 aspartyl protease family protein contai...    28   7.2  

>At1g29380.1 68414.m03592 hypothetical protein
          Length = 228

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 264 TPLVTE-IVPSLQF-GDISVTGDMP-IGGTIKVSGCFPVYGTVAVDGNMPSSGKAVINTG 434
           TP +T+   PSL F G  + TG  P + GT    G  P+YGT       P  G  V   G
Sbjct: 51  TPTITQPSPPSLTFPGPTTPTGGYPPLDGTTPTGGYPPLYGTT------PPGGGDVGGGG 104

Query: 435 GGF 443
           GG+
Sbjct: 105 GGY 107


>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1102

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 132 PYGSSLYIPTVATGNGQATVTSLPNCFSPATGFPDYGPVRTNQVTP-LVTEIVPS 293
           PY  S Y+P V+    Q     +P+   PA   P + P  T+   P + T  VPS
Sbjct: 825 PYTDSYYVPQVSHPPMQQPTMFMPHQAQPAPQ-PSFTPAPTSNAQPSMRTTFVPS 878


>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1104

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 132 PYGSSLYIPTVATGNGQATVTSLPNCFSPATGFPDYGPVRTNQVTP-LVTEIVPS 293
           PY  S Y+P V+    Q     +P+   PA   P + P  T+   P + T  VPS
Sbjct: 827 PYTDSYYVPQVSHPPMQQPTMFMPHQAQPAPQ-PSFTPAPTSNAQPSMRTTFVPS 880


>At2g45340.1 68415.m05642 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 691

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 92  DVRERLPRVELVQPLRLIPLHSHSSDRERPGHGHLLTEL 208
           ++R+  P VE  Q  RL  L +H S  +RP    ++ EL
Sbjct: 646 NLRKNFPEVEAAQLARLGLLCTHESSNQRPSMEDVIQEL 684


>At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 783

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
 Frame = -2

Query: 404 RHVTIDGDRAVNREATAHFYRAAYRHVPC------DRNVTELQRRHDLGDQGRHLVS 252
           +H  IDG    + E      R   RH PC      DRN+T  Q+ H   D  +H+ +
Sbjct: 559 KHQRIDGKTTNDGELFRQMNRNVLRHGPCSIGIFVDRNITGFQQPHGF-DSVQHVAT 614


>At1g74790.1 68414.m08665 expressed protein contains similarity to
           hedgehog-interacting protein GI:4868122 from [Mus
           musculus]
          Length = 695

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 336 GGTIKVSGCFPVYGTVAVD-GNMPSSGKAVINTGGGFVTQYIDPSCGCGR 482
           GG   V    P++  +  +   + SSGK+   TGG F     DP C  GR
Sbjct: 509 GGNTSVKSLNPIFPVMGYNHSEVDSSGKSASITGGYFYRSETDP-CIAGR 557


>At5g64440.1 68418.m08095 amidase family protein low similarity to
           enantiomerase-selective amidase [Rhodococcus sp.]
           GI:152052; contains Pfam profile PF01425: Amidase
          Length = 607

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 23/93 (24%), Positives = 40/93 (43%)
 Frame = +3

Query: 81  LSLPMSGNGCLGSNLYSPYGSSLYIPTVATGNGQATVTSLPNCFSPATGFPDYGPVRTNQ 260
           L +  +GN        +P+    Y  T  + +G A + +   C S A G    G VR   
Sbjct: 254 LGMGTTGNNSNYGTTRNPHDPKRY--TGGSSSGSAAIVAAGLC-SAALGTDGGGSVRIPS 310

Query: 261 VTPLVTEIVPSLQFGDISVTGDMPIGGTIKVSG 359
               +T +  +  +G   +TG +  GGT+++ G
Sbjct: 311 ALCGITGLKTT--YGRTDMTGSLCEGGTVEIIG 341


>At5g18610.1 68418.m02203 protein kinase family protein contains
           eukaryotic protein kinase domain, PROSITE:PS00107
          Length = 513

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 351 VSGCFPVYGTVAVDGNMPSSGKAVINTGGGFVTQ 452
           +SGC P +G+ A D     S K  ++   G VTQ
Sbjct: 1   MSGCLPCFGSSAKDAASKDSVKKELSAKDGSVTQ 34


>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 142 HPSTFPQ*RPGT--ARPRSPPYRIALAPQRGFRTTAPSALTK*RPWSPRS 285
           H S   + RP T   RPR+P +R A+   R       SA T  RP +P +
Sbjct: 242 HESAATERRPQTPETRPRTPEHRSAIPDTRPRTPIHESAATGRRPQTPET 291


>At2g03200.1 68415.m00273 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 461

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 383 DRAVNREATAHFYRAAYRHVPCDRNVTELQRRHDLGDQGRHLVSADGAV 237
           DR + +      +R + RHV   +N+T++Q+     ++G H ++  GAV
Sbjct: 33  DRTLPKNLPRSGFRLSLRHVDSGKNLTKIQKIQRGINRGFHRLNRLGAV 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,791,873
Number of Sequences: 28952
Number of extensions: 350591
Number of successful extensions: 953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)