Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11i07
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21513| Best HMM Match : Extensin_2 (HMM E-Value=4) 36 0.039
SB_11163| Best HMM Match : DUF1104 (HMM E-Value=1.7) 33 0.16
SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11) 33 0.16
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_37509| Best HMM Match : PAE (HMM E-Value=0) 30 1.5
SB_11869| Best HMM Match : Excalibur (HMM E-Value=8) 30 1.5
SB_59641| Best HMM Match : PAE (HMM E-Value=0) 30 1.5
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 30 2.0
SB_40793| Best HMM Match : Toxin_30 (HMM E-Value=9.6) 30 2.0
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_52975| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38) 29 2.6
SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 29 4.5
SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12) 29 4.5
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 28 7.9
SB_30682| Best HMM Match : Formyl_trans_N (HMM E-Value=2.8e-08) 28 7.9
SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027) 28 7.9
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_21513| Best HMM Match : Extensin_2 (HMM E-Value=4)
Length = 484
Score = 35.5 bits (78), Expect = 0.039
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 213 ASVNFLPATAASQKHETAFPS--PFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPNEG 386
ASV+ P A Q H+ + + A +PH+ +V+ Q AP + +V +TAP +
Sbjct: 335 ASVSTAPQVTAPQPHKASVSTAPQVTAPHPHKASVSTAPQVTAPQPHKASV--STAP-QV 391
Query: 387 TSPYPYALPVSAFP 428
T+P P+ VS P
Sbjct: 392 TAPQPHKASVSTAP 405
>SB_11163| Best HMM Match : DUF1104 (HMM E-Value=1.7)
Length = 282
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 150 TGDLYVAATEEDGVKSQW-LTDASVNFLPATAASQKHETAFPSPFAASYPHEETVNKKKQ 326
T L AA +ED Q LTDA VN A ++ P F A HE K+K+
Sbjct: 194 TSSLLKAAKDEDFKAFQSDLTDAVVNTAKPVARKVAEQSGLPDSFGAGLQHERPAQKEKE 253
>SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)
Length = 1123
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 150 TGDLYVAATEEDGVKSQW-LTDASVNFLPATAASQKHETAFPSPFAASYPHEETVNKKKQ 326
T L AA +ED Q LTDA VN A ++ P F A HE K+K+
Sbjct: 194 TSSLLKAAKDEDFKAFQSDLTDAVVNTAKPVARKVAEQSGLPDSFGAGLQHERPAQKEKE 253
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 33.1 bits (72), Expect = 0.21
Identities = 28/100 (28%), Positives = 49/100 (49%)
Frame = +3
Query: 207 TDASVNFLPATAASQKHETAFPSPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPNEG 386
TD+S + + T S+ T + S H + + + A AP + +P T+
Sbjct: 2889 TDSSYHSV--TQKSRLPSTTSSNSSRTSSIHVPSFHSTQPANAP----FTLPSTSRSFNT 2942
Query: 387 TSPYPYALPVSAFPSQASESLIPCLDPAKANIPQYSPFHF 506
+SP P P+S++ S++S + P LDP+ + P+ S HF
Sbjct: 2943 SSP-PSPKPLSSYFSRSSTDIPPLLDPSLPS-PKLSSSHF 2980
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 32.7 bits (71), Expect = 0.28
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +3
Query: 264 AFPSPFAAS-YPHEETVNKKKQAGAPV--QYAYAVPMTT-APNEGTSPYPYALPVSAFPS 431
A P+P AS YP ++ Q G P Q A P AP YP A P +A+P+
Sbjct: 1259 AAPAPAPASAYPSQDAAY---QTGYPAYQQGGQAYPSAAPAPAPAAQAYPSAAPATAYPT 1315
Query: 432 QASESLIPCLDPAKANIPQYSP 497
QA + P PA A P +P
Sbjct: 1316 QAPAN--PTAAPATA-YPAQAP 1334
>SB_37509| Best HMM Match : PAE (HMM E-Value=0)
Length = 483
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 6/29 (20%)
Frame = +3
Query: 66 QGHVTQRNDPNQLHP------VHGLYIKP 134
+GHV++R+ PN+ HP +HG+Y KP
Sbjct: 363 RGHVSRRSLPNKPHPSWAYRHIHGIYCKP 391
>SB_11869| Best HMM Match : Excalibur (HMM E-Value=8)
Length = 269
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +3
Query: 240 AASQKHETAFPSPFAASYPHEETVNK------KKQAGAPVQYAYAVPMTTAPNEGTSPYP 401
AAS ET SP+ AS P EE ++ K++ AP A A A EGTS
Sbjct: 115 AASPSDETTTDSPWDASAPTEEAPSRDEAAAPKQEEEAPKDEAAASEEVAAATEGTSAAT 174
Query: 402 YALPVSAFPSQASES 446
SA ++ +S
Sbjct: 175 ETNDASAEVNETDKS 189
>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
Length = 1252
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 6/29 (20%)
Frame = +3
Query: 66 QGHVTQRNDPNQLHP------VHGLYIKP 134
+GHV++R+ PN+ HP +HG+Y KP
Sbjct: 1132 RGHVSRRSLPNKPHPSWAYRHIHGIYCKP 1160
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 29.9 bits (64), Expect = 2.0
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 9/184 (4%)
Frame = +3
Query: 18 TMLKVL-SILIVIYSCVQGHVTQRNDPNQLHP-VHGLYIKPSVDGSTGDLYVAATEEDGV 191
T+L L ++L +Y+ + T + L P +H L PS ++ Y A+
Sbjct: 619 TVLPALHTVLSALYTLLPALHTVLPALHTLLPALHTLAASPSYSPASPS-YTPASPSYTP 677
Query: 192 KSQWLTDASVNFLPATA----ASQKHETAFPS--PFAASY-PHEETVNKKKQAGAPVQYA 350
S + AS ++ P + AS + +A PS P + SY P + + + +P +
Sbjct: 678 TSPSYSPASPSYSPTSPSYSPASPSYTSASPSYSPASPSYSPTSPSYSPAIPSNSPASPS 737
Query: 351 YAVPMTTAPNEGTSPYPYALPVSAFPSQASESLIPCLDPAKANIPQYSPFHFFYPQMMSA 530
Y+ A T P P S + AS S P + P YSP Y +
Sbjct: 738 YS----PASPSYTPASPSYTPASPSYTPASPSYTPTIPSYSPTSPSYSPTSPSYSPASPS 793
Query: 531 YTKS 542
YT +
Sbjct: 794 YTSA 797
>SB_40793| Best HMM Match : Toxin_30 (HMM E-Value=9.6)
Length = 217
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Frame = +3
Query: 267 FPSPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPNEGTSPYPYALPVSAFPSQASES 446
F SP+ +S P T ++ +P ++ P+ + +P+ P E
Sbjct: 17 FVSPWDSS-PESFTSDQLSPKYSPSPFSSKAPLPVFVEFTPGDFIAPVPIRCRPVPVGEP 75
Query: 447 LI-----PCLDPAKANIPQYSPFHFF 509
LI C DP + IP P HFF
Sbjct: 76 LIFASVDDCADPEPSLIPLMDPVHFF 101
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 262 VSCFCEAAVAGKKLTDASVNHCDLTPSSSVAAT 164
+ C C+A G +T VN C L S V AT
Sbjct: 502 IKCMCKAGYTGDGITCEDVNECQLPGSCHVHAT 534
>SB_52975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = +3
Query: 117 GLYIKPSVDGSTGDLYVAATEEDGVKSQWLTDASVNFLPATAASQKHETAFPSPFAASYP 296
G + DG+ D A T+E G SQWL D + T A+ A + + A+
Sbjct: 385 GKLYRSGQDGAAIDR--AFTDETGYDSQWLPDDHPAYQEYTEATHSMGGAIGNVWRAAQV 442
Query: 297 HEETVNKKKQAGA 335
+ N K+ GA
Sbjct: 443 ESKVWNSKENLGA 455
>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
Length = 450
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Frame = +3
Query: 165 VAATEEDGVKSQW---LTDASVNFLPATAASQKHETA-FPSPFA-ASYPHEETVNKKKQA 329
+AA+++ +++Q L + PA + Q H + PSP + H +V+++ A
Sbjct: 111 IAASQQQQLRAQQQAALAAQQAHSQPAVSLPQPHPSPQMPSPAQLGAQSHPGSVSQQMHA 170
Query: 330 GAP-VQYAYAVPMTTAPNEGTSPYPYALPVSAFPSQASESLIPCLDPAKANIPQYSPFHF 506
+QY + + AP P P + PV+ P IP PA N+ SP F
Sbjct: 171 AQTRMQYVQSPAVMRAPTPAPHPSPASQPVAPSP-----VCIPVQSPA-PNMMSPSPQQF 224
>SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1706
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/91 (21%), Positives = 36/91 (39%)
Frame = +3
Query: 213 ASVNFLPATAASQKHETAFPSPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTAPNEGTS 392
A V +P ++ P+P + + N Q+ A ++ A VP T P+ T+
Sbjct: 1259 AGVKQVPIHSSPDILARVLPAPTSTPLMNVSIANPSNQSLANIKPALGVPAITVPHSNTA 1318
Query: 393 PYPYALPVSAFPSQASESLIPCLDPAKANIP 485
P V++ P + +L+ P P
Sbjct: 1319 SKPLTKTVTS-PLLPNSNLLVNTSPVSQTHP 1348
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 18 TMLKVLSILIVIYSCVQGHVTQRNDPNQLHPVHGLYIKPSVDGSTGDLYVAATE 179
T + LS+ + +Y CV GH T LH + + ++ ST L AT+
Sbjct: 1688 TPVDALSLRVAVYGCVSGHYTP-----DLHMMLAISATSTIPASTFSLMSTATQ 1736
>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
Length = 1328
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 106 IQYMDSISSLRSTDLRETFTLPRQKKMESNRNG*PMHPSTSYQPQQLHRN 255
I+ MDS S+L LR+TF L R+K ++ N M + S + L RN
Sbjct: 905 IRSMDSSSTLEDNMLRKTFPLKRRKMSRASLNQ-KMLTNASVRVIDLSRN 953
>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 972
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Frame = +3
Query: 228 LPATAASQKHETAFPSPFAASYPHEETVNKKKQAGAPVQYAYAVPMTTA-PNEGTSPYPY 404
L A A + + S AA + T+ + G P QY Y +P P++ S P
Sbjct: 572 LDADVAYHEESVSVASSSAAIPMYGSTMAQASLPGQPGQYQYVIPTQPGIPSQFLS--PG 629
Query: 405 ALPVSAFPSQASESLIPCLDPAKANIPQYSP 497
P P + +P PA + P Y P
Sbjct: 630 QAPHMVLPPGSPVQQVPGYQPAYLHTP-YQP 659
>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 105 HPVHGLYIKPSVDGSTGDLYVAATEEDGVK 194
H + G++ P + G D+ A EEDGVK
Sbjct: 365 HEIVGVFTVPDIKGKP-DILAAGAEEDGVK 393
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 27.9 bits (59), Expect = 7.9
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 7/115 (6%)
Frame = +3
Query: 129 KPSVDGSTGDLYVAATEEDGVKSQWLTDASVNFLPATAASQKHET-AFPSPFAASYPHEE 305
KP + G+T V++ D K A++ FL A++ T + SP S +
Sbjct: 2012 KPKIGGATIKFGVSSETSDASKPSVADAAALGFLKVPASTPPDTTPSASSPADTSSSSKP 2071
Query: 306 TVNKKKQAGAPVQYAYAVPMTTAPNE------GTSPYPYALPVSAFPSQASESLI 452
++ +AG +P P E T P P+A A + S I
Sbjct: 2072 SIGDAAKAGFLKIPTAGLPKAEVPKETSTSTTTTQPLPFAFGTGAATTTDDNSAI 2126
>SB_30682| Best HMM Match : Formyl_trans_N (HMM E-Value=2.8e-08)
Length = 146
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 105 HPVHGLYIKPSVDGSTGDLYVAATEEDGVK 194
H + G++ P + G D+ A EEDGVK
Sbjct: 49 HEIVGVFTVPDIKGKP-DILAAGAEEDGVK 77
>SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)
Length = 406
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 333 APVQYAYAVPMTTAPNEGTSPYPYALPVSAFPSQASESLIPCLDPAKANIPQYSPFHFFY 512
AP Y Y+ + + P+ + YP + P S +P+ S P P + P SP+ Y
Sbjct: 54 APPPYQYSAYLASYPSSYPASYPASYPAS-YPASYPAS-YPASYP--TSYPYPSPYPAPY 109
Query: 513 PQMMSA 530
P SA
Sbjct: 110 PATYSA 115
>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1603
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 123 YIKPSVDGSTGDL-YVAATEEDGVKSQWLT 209
+++ S+ TG + Y+ +TE GVK+ WLT
Sbjct: 837 WLELSLPSKTGRVNYIFSTENPGVKADWLT 866
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,809,604
Number of Sequences: 59808
Number of extensions: 463694
Number of successful extensions: 1541
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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