Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i06
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    28   1.7  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    27   2.2  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    27   2.2  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    27   2.2  
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    25   8.9  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   8.9  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   8.9  

>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/42 (23%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 576 WIGPYFMKYVSKYFLNSLGFNL-FIYQKMNFAQNSIMSYLPR 454
           W+G + + + + +  N++GF L +IY  +N   + ++ +L +
Sbjct: 412 WLGNFMISFFTPFINNAIGFKLGYIYACINLFSSFMIFFLAK 453


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -3

Query: 395 IFKSHWTSLIRIFEGPRTVTSE----YDEVTVMGPVDCWIEIDGTISGSD 258
           IF+S W  L++  E  + +T E    Y  +T++G V     ID  +S +D
Sbjct: 306 IFRSDWPGLVKELEDTKAITPEQAKLYRHLTIVGLVG---SIDNDMSSTD 352


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 576 WIGPYFMKYVSKYFLNSLGFNL-FIYQKMN 490
           W+G + + + + +  NS+GF L +IY  +N
Sbjct: 412 WLGNFMVSFFTPFISNSIGFKLGYIYACIN 441


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -3

Query: 443 LNP-ERKARLITISRNIIFKSHWTSLIRIFEGPRTVT---SEYDEVTVMGPVDCWIEIDG 276
           LNP    AR+I +S+  + +    +L+++  G   V       DE++  GP   W+  DG
Sbjct: 196 LNPIPTYARIIGVSKLSLGEVVAKTLLKLGAGRSLVVCGEEGLDEISPAGPTHTWLVRDG 255

Query: 275 TIS 267
           TI+
Sbjct: 256 TIT 258


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 356 EGPRTVTSEYDEVTVMGPVDCWIEIDGTISGSDGGTPY 243
           E P +VT+E +      P DCW+ I G +       PY
Sbjct: 67  ESPISVTAE-ELAKHCSPDDCWMAIRGKVYNVTAYLPY 103


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = +3

Query: 240 GIWGSPIGAAYRSIDFYPAVNWSHH--GYFVVL*CY 341
           G WG  +     +I  Y   NW H    +F +  CY
Sbjct: 347 GYWGRVVSILLNTILVYMVSNWKHRFPVFFPIFLCY 382


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 587 ISNSYILEKQYKLASVLVLNKFQVSINIILYSLF-NTKNTIYTXV 718
           ISN   L+K+YK    L+ N+ Q   N+IL  L  +TK+ I   V
Sbjct: 13  ISNQQSLDKRYKRIKRLINNE-QFCKNVILQKLVDSTKDIIENKV 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,685
Number of Sequences: 5004
Number of extensions: 59776
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)