Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i06
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71...    31   1.0  
11_01_0088 - 662984-663024,663743-663774,664079-664503,665048-66...    31   1.0  
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114...    31   1.0  
08_02_0519 - 18097509-18097726,18097803-18097967,18098095-180983...    29   4.0  
03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178     29   5.3  
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016     28   9.3  

>12_01_0089 -
           707260-707317,707626-708050,708663-709621,710223-710408,
           710502-710604,710701-710883,710932-711012,711072-711164,
           711650-711832,713751-713966
          Length = 828

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +3

Query: 147 WFYMSERRKGV--GEMSERRFERVYP*ISHRTAGIWGSPIGAAYRSIDFYPAVNWSHHGY 320
           W Y   R  G   G +S    E +   I H   G    P+   YR +D+Y   +W + G 
Sbjct: 212 WCYYESRILGAHHGLISTYALEILVLYIFHLFHGTLDGPLAVLYRFLDYYSKFDWDNKGI 271

Query: 321 FVVL*CYGPRAL 356
            +    YGP +L
Sbjct: 272 SL----YGPISL 279


>11_01_0088 -
           662984-663024,663743-663774,664079-664503,665048-666006,
           666661-666846,666942-667044,667141-667323,667514-667606,
           668092-668274,669011-669031
          Length = 741

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +3

Query: 147 WFYMSERRKGV--GEMSERRFERVYP*ISHRTAGIWGSPIGAAYRSIDFYPAVNWSHHGY 320
           W Y   R  G   G +S    E +   I H   G    P+   YR +D+Y   +W + G 
Sbjct: 120 WCYYESRILGAHHGLISTYALEILVLYIFHLFHGTLDGPLAVLYRFLDYYSKFDWDNKGI 179

Query: 321 FVVL*CYGPRAL 356
            +    YGP +L
Sbjct: 180 SL----YGPISL 187


>08_02_1023 -
           23710825-23710950,23711037-23711120,23711367-23711492,
           23711593-23711712,23712046-23712153,23712243-23712395,
           23712505-23712600,23712716-23712800,23713278-23714268,
           23714870-23714915,23715806-23715964,23716516-23716651,
           23716734-23716900,23717366-23717696,23717827-23718062,
           23718326-23718514
          Length = 1050

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +1

Query: 178 LGKCLKDALNEYIPKLAT---GLPEYGVPPSEPLIVPSISIQQSTGPITVTSSYSDVTVR 348
           +G C+ D + E +P++A    GL   G+ P + L     S     GP  +  +     + 
Sbjct: 281 IGPCM-DTVVEPLPEMAADGRGLEFRGIRPGDMLTCQGGSAMLGIGPAALRPNTVSSPIL 339

Query: 349 GPSKMRIKDV 378
           GPSK+ +K V
Sbjct: 340 GPSKILVKKV 349


>08_02_0519 -
           18097509-18097726,18097803-18097967,18098095-18098305,
           18099151-18099419,18100915-18101017
          Length = 321

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 193 KDALNEYIPKLATGLPEYGVPPSEPLIVPSIS 288
           K  L+EY  K  T  PEY V  +E  + P +S
Sbjct: 130 KSILHEYTTKTKTDQPEYSVTKTEGSVTPYVS 161


>03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178
          Length = 1122

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +1

Query: 160 PREEKALGKCLKDALNEYIPKLATGLPEYGVPPSEPLIVPSISIQQSTGPI 312
           P   KA+G  L+   NE   K  +   ++G+P  E  ++P++ +     P+
Sbjct: 384 PLAIKAIGSSLRGETNEETWKDVSESDQWGLPAEEDRVLPALKLSYDRMPV 434


>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
          Length = 360

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 214 IPKLATGLPEYGVPPSEPLIVPSISIQQSTGP 309
           +P L  G P YG+P S    +  +S  ++TGP
Sbjct: 198 MPVLGHGFPPYGLPTSSAGALSLLSSARATGP 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,106,892
Number of Sequences: 37544
Number of extensions: 338927
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)