Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i06
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16)           31   1.4  
SB_32120| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-32)                 28   9.5  

>SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16)
          Length = 980

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +2

Query: 614 QYKLASVLVLNKFQVSINIILYSLFNTKNTIYTXVSFVAITXKSSR 751
           QY+  S ++  + Q + + +LY+L NTK T+ + ++ + +  K+ R
Sbjct: 318 QYQFLSEILKWRAQATPDHVLYTLLNTKGTVSSALTSIQLQKKADR 363


>SB_32120| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-32)
          Length = 459

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +2

Query: 515 LKPKLFRKYFETYFIK*GPIHKSIISNSYILEK-QYKLAS---VLVLNKFQVSINIILYS 682
           +KP L+RKYF  +++    +     +NS  LEK +Y+L S     V+ +    I I+L  
Sbjct: 160 VKPSLYRKYFTMHYLH--VLFAMTPNNSLNLEKMEYELLSRGLAQVVMESGALILIMLII 217

Query: 683 LFNTKNTIY 709
            F    T+Y
Sbjct: 218 FFGNSLTLY 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,433,792
Number of Sequences: 59808
Number of extensions: 405819
Number of successful extensions: 875
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)