Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i06
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z50796-1|CAA90668.1|  490|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    28   6.3  

>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 214 IPKLATGLPEYGVPPSEPLIVPSISIQQSTGPITVTSSYSDV 339
           IP +A G  +Y V  SE +I+P  +IQ     ITV   +  V
Sbjct: 332 IPIVAPGKMDYDVEKSEAVILPPPAIQPEPVYITVPEKHESV 373


>Z50796-1|CAA90668.1|  490|Caenorhabditis elegans Hypothetical
           protein T05A6.4 protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 390 KNNVSGNCYKSCFSFGI*IPNN--VGDTTLW 476
           KN+VSG    +C++FG+ + NN  + DTT +
Sbjct: 111 KNDVSGQFEFACYTFGLTVVNNSQLSDTTFF 141


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 163 REEKALGKCLKDALNEYIPKLATGLPEYGVPPSEPLIVPSISIQQSTGPITVTSSYSD 336
           + E+  G+   + + E IP   T     G PP+      S S Q STG  T TSSY +
Sbjct: 222 KPEEIEGEDEYEDVEEPIPPPNTRKTLLGEPPAGAASSSSPSAQSSTGSSTGTSSYQN 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,691,709
Number of Sequences: 27780
Number of extensions: 330747
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)