Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i05
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1468| Best HMM Match : PK (HMM E-Value=2.2e-19)                     75   5e-14
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_26849| Best HMM Match : FlgH (HMM E-Value=7.5)                      29   4.6  
SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)                     29   4.6  
SB_44208| Best HMM Match : DHHA2 (HMM E-Value=8.3)                     28   6.1  
SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_18036| Best HMM Match : DUF29 (HMM E-Value=8)                       28   6.1  
SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_1468| Best HMM Match : PK (HMM E-Value=2.2e-19)
          Length = 211

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 32/58 (55%), Positives = 44/58 (75%)
 Frame = +3

Query: 159 SQLQHMCGLDIDSKSSYIRLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHE 332
           S L+    LDID     IR SG++CTIGPASR+V ++ +++E GMN+AR+NFSHG+HE
Sbjct: 28  SNLEFRSELDIDKHPLTIRNSGVVCTIGPASRSVEIVAQLIENGMNIARLNFSHGTHE 85



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 25/64 (39%), Positives = 42/64 (65%)
 Frame = +3

Query: 444 RTGLLEGGGSAEVELKKGETIKLTTSSDYQEKGNADTIYVDYKNITNVVKPGNRIFIDDG 623
           R     G    E++L+KG+ +K++T     ++GN + I+VDY+NI  VV+ G  +++DDG
Sbjct: 76  RLNFSHGTHEGEIKLEKGQKLKVSTDKAMYDQGNTECIFVDYENIVKVVQIGGTVYVDDG 135

Query: 624 LISI 635
           LIS+
Sbjct: 136 LISL 139


>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 15/163 (9%)
 Frame = +3

Query: 108 TMAFAGAVEKPTVANVGSQLQHMCGLDIDSKSSYIRLSGIICTIGPASRNVAVLEKMMET 287
           T      +E    A  GS+ + +  L+   ++   R+  + C +    R    +++ +E 
Sbjct: 274 TAGIRSELENTKKALKGSE-ERVSSLEKTVEARESRIRTLECRVDELERQKKKIKEELEC 332

Query: 288 ---GMNVARMNFSHGSHEY--HAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI--- 443
                  AR + S    EY  HA+ ++   E      A L       +ALDTK  E+   
Sbjct: 333 VSFNTQAARASKSQLLREYDEHAKEMKRLEEELNKAKASLKDKQDQLLALDTKYKELIAD 392

Query: 444 -------RTGLLEGGGSAEVELKKGETIKLTTSSDYQEKGNAD 551
                    GL E   SA  ELKK E +    +++ Q  G+++
Sbjct: 393 NEGLKDQMRGLRETANSATQELKKKEQLLRALATERQSSGDSE 435


>SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
 Frame = +3

Query: 252 RNVAVLEKMMETG--MNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLGSPFSLAI-AL 422
           RN A LE+    G  + +AR NF     E  A+T + C E   + ++++       + AL
Sbjct: 155 RNEAALEREQAVGDALAIARKNFERRRKEVIAQTRQQCEEEAATEASRVARLHQQEVGAL 214

Query: 423 DTKGPEIRTGLLEGGGSAEVELKKGETIKLTTSSDYQEKGN 545
           D +  +++  L     S     KK   + L    DY+   N
Sbjct: 215 DQRIDDLKNML----ASERAAAKKLAGVHLALKEDYKRFQN 251


>SB_26849| Best HMM Match : FlgH (HMM E-Value=7.5)
          Length = 317

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 475 AEPPPSKSPVLISGPLVSNAMAKEKGEP 392
           A PPPS+SPV  +G  +S+A   +K +P
Sbjct: 17  ALPPPSESPVWRTGNALSSAKKDKKRQP 44


>SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)
          Length = 1176

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 46/198 (23%), Positives = 75/198 (37%), Gaps = 20/198 (10%)
 Frame = +3

Query: 129 VEKPT-VANVGSQLQHMCGLDIDSKSSYIRLSGIICTIGPASRNVAVLEKMMETGMNVAR 305
           +EKP  +A  G    + C   + S+ +      II  I      +  L++ ++ GM +  
Sbjct: 382 IEKPRFIALRGCAFHNRCN-SLSSEGTVSDGENIILRIPAGQYTIETLKRQIDGGMRLGE 440

Query: 306 MNFS--HGSHEYHAETIRN----C------REAEKSYSAKLGSPFSLAIALDTKGPEIRT 449
              S    S E H   + N    C      RE E +   K+ +    AI +         
Sbjct: 441 KPISIRDSSLEVHRNVVLNEPLACLLGLKTRELEANTRHKIKTIGHEAIFIHCDLVNASD 500

Query: 450 GLLEGGGS---AEVELKKGETIKLTTSSDYQEKGNADTIYVDYKNITNVVKPGNRIF--- 611
            L +G  S   A VEL +G+     +   +   G+ +     Y+N+    K G  +F   
Sbjct: 501 SLQQGAPSQILASVELDEGKIYLNPSDPTHDVLGSLEQEVKHYENVRKKYKRGQSVFSKL 560

Query: 612 -IDDGLISIICQSVSADT 662
            +  GLIS+I  S    T
Sbjct: 561 SVVLGLISVILGSSGLGT 578


>SB_44208| Best HMM Match : DHHA2 (HMM E-Value=8.3)
          Length = 289

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 330 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 443
           E HA+   +   A+KSY   L S  +LA  LD   P++
Sbjct: 4   ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 41


>SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 330 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 443
           E HA+   +   A+KSY   L S  +LA  LD   P++
Sbjct: 287 ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 324


>SB_18036| Best HMM Match : DUF29 (HMM E-Value=8)
          Length = 125

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 330 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 443
           E HA+   +   A+KSY   L S  +LA  LD   P++
Sbjct: 84  ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 121


>SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 330 EYHAETIRNCREAEKSYSAKLGS 398
           E+H E IR  +EA KSY  K GS
Sbjct: 119 EHHEEAIRRHKEALKSYEKKDGS 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,919,569
Number of Sequences: 59808
Number of extensions: 408943
Number of successful extensions: 1215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)