Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i02
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...   211   9e-56
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    29   0.54 
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    29   0.95 
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   5.1  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   5.1  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   5.1  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    26   6.7  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    25   8.9  

>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score =  211 bits (515), Expect = 9e-56
 Identities = 113/212 (53%), Positives = 143/212 (67%), Gaps = 3/212 (1%)
 Frame = +1

Query: 112 SCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLIR 291
           SCR Y+ ++PEV+++V+VNVR I EMGAYV LLEY+NIEGM               K IR
Sbjct: 5   SCRMYENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHIR 64

Query: 292 VGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETS 471
           VG+ E VVV+RVDKEKGYIDLSKRRVS ED+ KC ER+ K+KAV+SI+RH+AE    + +
Sbjct: 65  VGRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAE----KHN 120

Query: 472 EQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDPSVLDECGLDEETKDV---LLANIKR 642
             LE +Y    W     Y+K   AYD FK A  +P  + E GL+     V   LLA I R
Sbjct: 121 VPLETMYTTIGW---PLYRKYGHAYDAFKLAISNPDHVFE-GLEPPKSGVINDLLAQISR 176

Query: 643 KLTSQAVKIRADIECACYGYEGIDAVRAALKA 738
           +LT Q +KIRAD+E  C+GYEGI+A++AALKA
Sbjct: 177 RLTPQPIKIRADVEVTCFGYEGINAIKAALKA 208


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 499 TAWYFEEKYKKKASAYDFFKQAAVDPSVLDECGLDEETKDV 621
           T +YFE  +     A D F Q  +DP  L+EC  D E + V
Sbjct: 107 TNYYFEVSHDALYGALDRFAQFFIDPLFLEEC-KDREIRAV 146


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
 Frame = +1

Query: 289 RVGKTEPVVVIRVDKEKGYIDLS-KRRVSAEDIYKCTERYAKAKAV-NSILRHVAELLHY 462
           R+ + E + V   + EK Y +   + ++S+  I +  ++ A+   + N +L+   E  H+
Sbjct: 356 RISELE-MAVKEYESEKSYSEKEYEEKISSLRI-ELEDKLAEIDMLRNKLLKE--EHKHH 411

Query: 463 ETSEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDPSVLDECGLDEETKDVLLANIKR 642
            TSE+LEEL K  A   +++     +A +   QA +    L+    D   K +    I+R
Sbjct: 412 STSEKLEELSKYVASIQDKERNNGQNALEL--QARIQQ--LERRNEDMYNKLLAEEIIRR 467

Query: 643 KLTSQAVKIRADIECAC 693
           KL +   +++ +I   C
Sbjct: 468 KLHNDIQELKGNIRVFC 484


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 431 SCDM*QSSSIMKLLSNWKNFIKKQLGTLKRNIRRKPQHMTSS 556
           +C M  + +  KLL+ ++N + +QL  L+   +  P  MTS+
Sbjct: 615 NCGMKLNRTKEKLLTPFRNLLMEQLNELQAKNQETPSEMTST 656


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 475 QLEELYKKTAWYFEEKYKKKA-SAYDF 552
           Q+EEL  KT WY+  + +K   S Y++
Sbjct: 470 QIEELDAKTPWYYHYELEKDVKSTYEY 496


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1050

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = +1

Query: 319  IRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEELYKK 498
            I  ++E  +  L   R+ A+ +  C        A   I+++  E +    S +LE L K 
Sbjct: 796  IEAERESMHQMLETFRIKADVVVLCLAAM-NLDAYRYIVKN--EHVRPSKSSELENLLKD 852

Query: 499  TAWYFEEKYKKKASAYD 549
             +W+ EEK K++ +  D
Sbjct: 853  DSWWQEEK-KRRGNTVD 868


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +1

Query: 301 TEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQL 480
           TEP+V ++   E+  +     R S   +    E + KAK        + +  H ETS+ +
Sbjct: 606 TEPLVGLKTASEED-LPTWYYRHSLVFVSSSNECWKKAKRAKRRYGRLMQSEHTETSDMM 664

Query: 481 EELYKKTAWY 510
           E+ Y+    Y
Sbjct: 665 EQHYRAVTQY 674


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +1

Query: 373 AEDIYKCTERYAKA----KAVNSILRHVAELLHYETSEQLEELYKKTAWYFEEKYKKKAS 540
           A+  YK T R  K     +A N +   +  L +     + E+  +K   Y +E +     
Sbjct: 30  AQVSYKYTNRSPKMALNQEAYNWLREQIRGLRNLHLLPEEEQWLRKNCPYLKESF----- 84

Query: 541 AYDFFKQAAVDPSVLDECGLDEETKDV 621
            Y+F  +   DP        D ETKD+
Sbjct: 85  -YEFMHEFEFDPENSISLNYDSETKDL 110


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 180 DGSNVHHHHIFNFRIFLLIKSTRQRH 103
           DG+ +  HH F+FR +  +K  R+++
Sbjct: 24  DGTLLDKHHRFHFRTYRAMKYIREKY 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,517
Number of Sequences: 5004
Number of extensions: 55393
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)