Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11i02
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0677 + 10343089-10343604,10344316-10344462,10344539-103446...   183   2e-46
07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239...   179   2e-45
08_02_1260 - 25680618-25680677,25680763-25680893,25681085-256811...    30   1.7  

>03_02_0677 +
           10343089-10343604,10344316-10344462,10344539-10344643,
           10345411-10345509,10345662-10345814
          Length = 339

 Score =  183 bits (445), Expect = 2e-46
 Identities = 101/232 (43%), Positives = 143/232 (61%), Gaps = 21/232 (9%)
 Frame = +1

Query: 103 MP-LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXN 279
           MP L CR Y+ ++PEV+  VM+ V+ IA+MGAYV LLEYNNIEGM              +
Sbjct: 1   MPNLECRMYEPRFPEVDAAVMIQVKHIADMGAYVSLLEYNNIEGMILFSELSRRRIRSIS 60

Query: 280 KLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLH 459
            LI+VG+ EP +V+RVD++KGYIDLSKRRVS E+ + C +RY K+K V+SI+RHVAE L 
Sbjct: 61  SLIKVGRQEPAIVLRVDRDKGYIDLSKRRVSEEEAHACEDRYNKSKLVHSIMRHVAETLG 120

Query: 460 YETSEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDP-SVLD-------ECGLD---- 603
            +    LE LY++  W     Y+K   A++ FK    DP ++LD       E G D    
Sbjct: 121 ID----LEPLYQRIGWPL---YRKYGHAFEAFKLIVADPDAILDSLTYEEKETGADGQEV 173

Query: 604 --------EETKDVLLANIKRKLTSQAVKIRADIECACYGYEGIDAVRAALK 735
                    E KD L+ NI+R++T Q +KIRAD+E  C+ ++G+  ++ A++
Sbjct: 174 TKVVPAVTPEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKQAMR 225


>07_03_1773 -
           29422660-29422806,29423103-29423201,29423811-29423915,
           29423990-29424136,29424436-29424954
          Length = 338

 Score =  179 bits (436), Expect = 2e-45
 Identities = 104/233 (44%), Positives = 139/233 (59%), Gaps = 22/233 (9%)
 Frame = +1

Query: 103 MP-LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXN 279
           MP L CR Y+  +PEVE  VM+ V+ +AE+GAYV LLEYNNIEGM               
Sbjct: 1   MPNLECRMYEAPFPEVETAVMIQVKHLAELGAYVSLLEYNNIEGMILYSELSRRRIRSIP 60

Query: 280 KLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLH 459
            LI+VG+ EP VV+RVD +KGYIDLSKRRVS  D   C +RY+K+K V+SI+RH+AE LH
Sbjct: 61  SLIKVGRQEPAVVLRVDHDKGYIDLSKRRVSHHDRRTCEDRYSKSKFVHSIMRHLAETLH 120

Query: 460 YETSEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDP--SVLD-------ECGLDE-- 606
            +    LE LY + AW     Y+    A+D FK    DP  ++LD       E G D+  
Sbjct: 121 LD----LEPLYHRIAW---PLYRTYGHAFDAFKLIVADPDAAILDSLTYDLTETGPDDQE 173

Query: 607 ----------ETKDVLLANIKRKLTSQAVKIRADIECACYGYEGIDAVRAALK 735
                     E KD L+ NI+R++T Q  KIRADI+  C+ Y+G+  ++ A++
Sbjct: 174 VTKTLPAVTPEIKDALIKNIRRRMTPQPHKIRADIDMKCFQYDGVLHIQEAMR 226


>08_02_1260 -
           25680618-25680677,25680763-25680893,25681085-25681163,
           25681250-25681280,25681358-25681410,25681441-25681511,
           25681610-25681678,25681776-25681889,25683101-25683293
          Length = 266

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 8/20 (40%), Positives = 18/20 (90%)
 Frame = +1

Query: 502 AWYFEEKYKKKASAYDFFKQ 561
           AWY++E+Y+K+A  +D++++
Sbjct: 19  AWYWDERYRKEAGPFDWYQK 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,371,982
Number of Sequences: 37544
Number of extensions: 324597
Number of successful extensions: 801
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)